View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_5 (Length: 433)
Name: NF5201_low_5
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 21006950 - 21007373
Alignment:
| Q |
9 |
acatcatcaaaaacagtctgattccaatgttgaaaaacttgattcaaatttttcaattttaattccaaacgaagcattccagtaccacaaacatttttta |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21006950 |
acatcaccaaaaacagtctgattccaatgttgaaaaacttgattcaaatttttcaattttaattccaaacgaagcattccagtaccacaaacattttttc |
21007049 |
T |
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| Q |
109 |
cccaagaatcagacactagcttgcggcggtcatcatgggtggaccatgatttgaaaattttaaacggggtggtatggggcacatcggaatagtccaacga |
208 |
Q |
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| T |
21007050 |
cccaagaatcagacactagcttgcggcggtcatcatgggtggaccatgatttgaaaaatttaaacggtgtggtatggtgcacatcggaatagtccaacga |
21007149 |
T |
|
| Q |
209 |
taataataaaggatggtgatctaattggtgacgaactataaggcacaacaagtggaatggcaccaaaaattcaaccaactctcattacaaatagcgcgat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21007150 |
taataataaaggatggtgatctaattggtgacgaac--taaggcacaacaagtggaatggcaccaaaaattcaaccaactctcattacaaatagcgcgat |
21007247 |
T |
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| Q |
309 |
caagacggattgccatattgtatgtgccaaagctcccattaaactaagtaaataaagagccagaacaaggaag---atgaatagccaagttagcattagt |
405 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
21007248 |
caagacggattgccatattgtatgtgccaaaactcccattaaactaagtaaataaagagccagaacaaggaagatcatgaagagccaagttagcattagt |
21007347 |
T |
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| Q |
406 |
ccacagcaaaaagtccaaacaagaaa |
431 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
21007348 |
ccaccgcaaaaagtccaaacaagaaa |
21007373 |
T |
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