View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_7 (Length: 408)
Name: NF5201_low_7
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 736854 - 737235
Alignment:
| Q |
11 |
atgaatattcaacagtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
736854 |
atgaatattcaacggtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
736953 |
T |
|
| Q |
111 |
tgcaaagatgtgtagaagaaacaacatgttaacttggaacaatcaattaaaggataactagattttggccgatcgagttacttggatcatacccttcctc |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
736954 |
tgcaaagatgtgtagaagaaagaacatgttaacttggaacaatcaattaaagtataactagattttggccgatcgagttacttggatcatacccttcctc |
737053 |
T |
|
| Q |
211 |
ctccaactggtcataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtctgattattttccaaattctgagcaatagc |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
737054 |
ctcctactggtcataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtctgattattttccaaattctgagcaatagc |
737153 |
T |
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| Q |
311 |
aaatcacttatagattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
737154 |
aaatcacttatagattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
737235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 1541455 - 1541074
Alignment:
| Q |
11 |
atgaatattcaacagtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1541455 |
atgaatattcaacggtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
1541356 |
T |
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| Q |
111 |
tgcaaagatgtgtagaagaaacaacatgttaacttggaacaatcaattaaaggataactagattttggccgatcgagttacttggatcatacccttcctc |
210 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1541355 |
tgcaaagatgtgtagaagaaagaacatgttaacttggaacaatcaattaaaggataactagatttttgccgatcgagttacttggatcatacccttcctc |
1541256 |
T |
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| Q |
211 |
ctccaactggtcataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtctgattattttccaaattctgagcaatagc |
310 |
Q |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1541255 |
ctccaagtagttataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtttgattattttccaaattctgagcaatagc |
1541156 |
T |
|
| Q |
311 |
aaatcacttatagattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
392 |
Q |
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| T |
1541155 |
aaatcacttatatattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
1541074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 17771503 - 17771122
Alignment:
| Q |
11 |
atgaatattcaacagtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17771503 |
atgaatattcaacggtgatttgtagacgaacttttattaaatcaaaactgcttagtctacacgcttgacgtaaatgtcgacaactggacataacgtttgt |
17771404 |
T |
|
| Q |
111 |
tgcaaagatgtgtagaagaaacaacatgttaacttggaacaatcaattaaaggataactagattttggccgatcgagttacttggatcatacccttcctc |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17771403 |
tgcaaagatgtgtagaagaaagaacatgttaacttggaacaatcaattaaaggataactagatttttgccgatcgagttacttggatcatacccttcctc |
17771304 |
T |
|
| Q |
211 |
ctccaactggtcataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtctgattattttccaaattctgagcaatagc |
310 |
Q |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17771303 |
ctccaagtagttataaagggagggggatacccctccatttagcaacatagtgaatctatagtatgatagtttgattattttccaaattctgagcaatagc |
17771204 |
T |
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| Q |
311 |
aaatcacttatagattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
392 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17771203 |
aaatcacttatatattgcatgaccttgggaagggaaatatgaagctggtaagatcagatcattatatgggggtgcacatgcc |
17771122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 27013446 - 27013370
Alignment:
| Q |
137 |
tgttaacttggaacaatcaattaaaggataactagattttggccgatcgagttacttggatcatacccttcctcctccaac |
217 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
27013446 |
tgttaactcagaacaatcaattaaaggataattagattttagccga----gttacttggatcataccgttcctcctccaac |
27013370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 27013335 - 27013285
Alignment:
| Q |
240 |
cccctccatttagcaacatagtgaatctatagtatgatagtctgattattt |
290 |
Q |
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||||||||||||||||||||||||||||| | |||| || ||||||||||| |
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| T |
27013335 |
cccctccatttagcaacatagtgaatctacaatatggtaatctgattattt |
27013285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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