View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5201_low_9 (Length: 376)
Name: NF5201_low_9
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 36891026 - 36890725
Alignment:
| Q |
13 |
attctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaagga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891026 |
attctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaagga |
36890927 |
T |
|
| Q |
113 |
ctttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacacata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36890926 |
ctttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacacata |
36890827 |
T |
|
| Q |
213 |
tgtataaccaattatagaaca--atatgtcaatatctgtttctaccnnnnnnncagaagt-aaatatatgtgtcatccaaaaaagctagcagcgcagctt |
309 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36890826 |
tgtataaccaattatagcacaatatatgtcaatatctgtttctacctaaaaaacagaagtaaaatatatgtgtcatccgaaaaagctagcggcgcagctt |
36890727 |
T |
|
| Q |
310 |
gt |
311 |
Q |
| |
|
|| |
|
|
| T |
36890726 |
gt |
36890725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 36877939 - 36877777
Alignment:
| Q |
33 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
36877939 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatcct |
36877840 |
T |
|
| Q |
133 |
tctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
195 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
36877839 |
tctttgttcagatgtgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 36897705 - 36897546
Alignment:
| Q |
34 |
tacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattctt |
133 |
Q |
| |
|
||||||| || |||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| || | ||||||| | |||||||| ||| | | |
|
|
| T |
36897705 |
tacttactgtagtataggattcgtttataccatggtaggctgctagaacttttgaaagctgaaggcttattagcaaggagatacagaggagtggatacct |
36897606 |
T |
|
| Q |
134 |
ctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctg |
193 |
Q |
| |
|
||| |||| |||||||||| |||||| ||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
36897605 |
cttcgttctgatgtgtgctaaggaaagcatagtaatttgctattatcacagctaaatctg |
36897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University