View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5202-Insertion-1 (Length: 750)
Name: NF5202-Insertion-1
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-1 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 328 - 750
Target Start/End: Original strand, 8578099 - 8578520
Alignment:
| Q |
328 |
ttcaagaaccgttttatctccaatatcatgttcattatccatcaccataaaaacatatcttcaatttctctcataatattgttttgaatacttgccaatg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8578099 |
ttcaagaaccgttttatctccaatatcatgttcattatccatcaccataaaaacatatcttcaatttctctcataatattgttttgaatacttgccaatg |
8578198 |
T |
|
| Q |
428 |
tgtgtgctttgcatttaataatcgtgatttttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggag |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8578199 |
tgtgtgctttgcatttaataatcgtgatttttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggag |
8578298 |
T |
|
| Q |
528 |
aaagaaagagaagcgctataggtacaaagtgtttaagaaaaggcatgcaatgatcacacaccataatcaaatcgg-aattctggttccaaactcggcttc |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8578299 |
aaagaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttc |
8578398 |
T |
|
| Q |
627 |
aatgattttgccgatctatcctgtgttgaactcgctcatcttggggaaggacatccatcaccgatggggttaggggacaataactaggtctagatccttt |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||| ||| |
|
|
| T |
8578399 |
aatgattttgccgatctatcctgtgttgaactcgctcatcttggggaaggacatccatcaccgatggtgttagggtacaataacttggtctacatcattt |
8578498 |
T |
|
| Q |
727 |
tcctcctttwaattttataattgg |
750 |
Q |
| |
|
| ||||||| |||||||||||||| |
|
|
| T |
8578499 |
t-ctccttt-aattttataattgg |
8578520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 8577747 - 8577919
Alignment:
| Q |
8 |
gttactgcttttcctttcacttgcatatgtacaagtgtttgttagagtacatggaataacacg-aaaaactaatgnnnnnnnggtttactaaagaatatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8577747 |
gttactgcttttcctttcacttgcatatgtacaagtgtttgttagagtacatggaataacacgaaaaaactaatgtttttttggtttactaaagaatatt |
8577846 |
T |
|
| Q |
107 |
gagtcaatataaaaaatgaatattccaacagttggtttaaatatcgctgatcagtccatgtgaatatagctca |
179 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||| |||| |
|
|
| T |
8577847 |
gagtcaatttaaaaaatgaatattccaacagttggtttaaatatctctgatcactccttgtgagtataactca |
8577919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 8577996 - 8578107
Alignment:
| Q |
199 |
tctctgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatggagcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8577996 |
tctctgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatggagcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaag |
8578095 |
T |
|
| Q |
299 |
agcttcaagaac |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8578096 |
agcttcaagaac |
8578107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 8597223 - 8597120
Alignment:
| Q |
203 |
tgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatgg-agcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaagagc |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
8597223 |
tgatcaaccttcccactagctgttaaatttcttaaagtttgcaaatcaatggaagcatt----ggaaaaatcgacgcaaccaaaatgcaagcctcagagc |
8597128 |
T |
|
| Q |
302 |
ttcaagaa |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
8597127 |
ttcaagaa |
8597120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 241 - 412
Target Start/End: Complemental strand, 8554461 - 8554290
Alignment:
| Q |
241 |
ttgcaaatcaatgga-gcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaagagcttcaagaactgctatagtatctcggtttcaagaaccgt |
339 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| | ||||||||||||| ||||| |||||||| |||||| || | ||||| |||||||||| || |
|
|
| T |
8554461 |
ttgcaaatcaatggaagcattaaaaggaacaatcaaagcaaccaaaatgcaagcctcgaagcttcaaaaactgc--taatttctcgatttcaagaacagt |
8554364 |
T |
|
| Q |
340 |
tttatctccaatatcatgttcattat-ccatcaccataaaaacatatcttcaatttctctcataatattgtttt |
412 |
Q |
| |
|
|||||| ||||||||| ||||| ||| |||||| | | ||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
8554363 |
tttatccccaatatcaggttcagtatcccatcatctcataaatatatgttcaatttctctcataataatgtttt |
8554290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 8597373 - 8597301
Alignment:
| Q |
8 |
gttactgcttttcctttcacttgcatatgtacaagtgtttgttagagtacatggaataacacgaaaaactaatg |
81 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8597373 |
gttactgctttgcctttcacttgca-atgtacaagtatttgttagagtacatggaataagacgaaaaactaatg |
8597301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 458 - 688
Target Start/End: Complemental strand, 33443531 - 33443304
Alignment:
| Q |
458 |
ttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggagaaagaaagagaagcgctataggtacaaagt |
557 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| | |||||||||||| ||| |||| |||||| |
|
|
| T |
33443531 |
ttaataacaggctacttatgaaaactttgaagattggtgtaaggaatataacagaacatactcttc----agagaaagagaagcactacaggttcaaagt |
33443436 |
T |
|
| Q |
558 |
gtttaagaaaaggcatgcaatgatcacacaccataatcaaatcgg-aattctggttccaaactcggcttcaatgattttgccgatctatcctgtgttgaa |
656 |
Q |
| |
|
||||||||||||| |||||| | |||| | || ||||||||||| ||||||||||| ||||| || |||||||||| || ||||||||||| |||||| |
|
|
| T |
33443435 |
gtttaagaaaaggtatgcaacggtcacccgacacaatcaaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcctgggttgaa |
33443336 |
T |
|
| Q |
657 |
ctcgctcatcttggggaaggacatccatcacc |
688 |
Q |
| |
|
|| ||||| ||| ||||||||| ||||||||| |
|
|
| T |
33443335 |
cttgctcaacttagggaaggacgtccatcacc |
33443304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University