View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202-Insertion-10 (Length: 165)
Name: NF5202-Insertion-10
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-10 |
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| [»] scaffold0578 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0578 (Bit Score: 127; Significance: 7e-66; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 127; E-Value: 7e-66
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 593 - 754
Alignment:
| Q |
6 |
caaaattcaaatcacaatgaaagtgttgacaacttgagatgcataaccatcaatttcacagccttgaaactcgactcgattctaaaaaatagttacctcg |
105 |
Q |
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| T |
593 |
caaaattcaaatcacaatgaaagtgttgacaacttgagatgcataaccattaatttgacagccttgaaactcgactcgattctaaaaaatagttacttcg |
692 |
T |
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| Q |
106 |
taagaattaaac--aacaatccacaaacataagcaactaacttgctatataaccaaaccagg |
165 |
Q |
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| T |
693 |
taagaattaaactatacaatccacaaacataaccaactaacttgttatataaccaaaccagg |
754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 7e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 7e-66
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 4954606 - 4954767
Alignment:
| Q |
6 |
caaaattcaaatcacaatgaaagtgttgacaacttgagatgcataaccatcaatttcacagccttgaaactcgactcgattctaaaaaatagttacctcg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4954606 |
caaaattcaaatcacaatgaaagtgttgacaacttgagatgcataaccattaatttgacagccttgaaactcgactcgattctaaaaaatagttacttcg |
4954705 |
T |
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| Q |
106 |
taagaattaaac--aacaatccacaaacataagcaactaacttgctatataaccaaaccagg |
165 |
Q |
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| T |
4954706 |
taagaattaaactatacaatccacaaacataaccaactaacttgttatataaccaaaccagg |
4954767 |
T |
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