View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5202-Insertion-2 (Length: 614)
Name: NF5202-Insertion-2
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 31078446 - 31077932
Alignment:
| Q |
8 |
cggcccagcttgaaaaaccgcataactataaggatctatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078446 |
cggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactca |
31078347 |
T |
|
| Q |
108 |
gcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacat |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078346 |
gcccaatcaagtccccatattttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacat |
31078247 |
T |
|
| Q |
208 |
catcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctcatc |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078246 |
cattgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctcatc |
31078147 |
T |
|
| Q |
308 |
gtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31078146 |
gtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtagccaaaagaaccacgtgagtgcagct |
31078047 |
T |
|
| Q |
408 |
gaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078046 |
gaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaa |
31077947 |
T |
|
| Q |
508 |
ctgattccaaagttg |
522 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31077946 |
ctgattccaaagttg |
31077932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 31132472 - 31131963
Alignment:
| Q |
8 |
cggcccagcttgaaaaaccgcataactataaggatctatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactca |
107 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||| ||||||| ||| ||||| || ||||| ||| || |||||||||||||||| |||| ||||||| |
|
|
| T |
31132472 |
cggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactca |
31132373 |
T |
|
| Q |
108 |
gcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacat |
207 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31132372 |
gcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacat |
31132273 |
T |
|
| Q |
208 |
catcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctcatc |
307 |
Q |
| |
|
||||||| |||||||| |||| |||||||| ||||||||| | | ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
31132272 |
catcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgtaaaccatattcttcacctcatc |
31132173 |
T |
|
| Q |
308 |
gtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagct |
407 |
Q |
| |
|
|| ||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
31132172 |
gttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttagagattaacaaaaagaaccacgtgagtgcagct |
31132073 |
T |
|
| Q |
408 |
gaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaa |
507 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||| | |
|
|
| T |
31132072 |
gaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatcca |
31131973 |
T |
|
| Q |
508 |
ctgattccaa |
517 |
Q |
| |
|
| |||||||| |
|
|
| T |
31131972 |
ccgattccaa |
31131963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 517
Target Start/End: Complemental strand, 31127763 - 31127255
Alignment:
| Q |
9 |
ggcccagcttgaaaaaccgcataactataaggatctatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcag |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31127763 |
ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcag |
31127664 |
T |
|
| Q |
109 |
cccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacatc |
208 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
31127663 |
cccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtc |
31127564 |
T |
|
| Q |
209 |
atcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctcatcg |
308 |
Q |
| |
|
|| | || ||||| ||| |||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| | |
|
|
| T |
31127563 |
gtcacaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgtaaaccatatccttcacctcattg |
31127464 |
T |
|
| Q |
309 |
taactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctg |
408 |
Q |
| |
|
||| |||| |||| |||||||| ||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31127463 |
taattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctg |
31127364 |
T |
|
| Q |
409 |
aagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaac |
508 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||| || ||| | |
|
|
| T |
31127363 |
aagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaa |
31127264 |
T |
|
| Q |
509 |
tgattccaa |
517 |
Q |
| |
|
||||||||| |
|
|
| T |
31127263 |
tgattccaa |
31127255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 614
Target Start/End: Complemental strand, 31077904 - 31077840
Alignment:
| Q |
550 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgttgctcgatc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31077904 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatc |
31077840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 550 - 598
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
| Q |
550 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt |
598 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
31128902 |
ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt |
31128854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 586
Target Start/End: Complemental strand, 31127222 - 31127186
Alignment:
| Q |
550 |
ccctaacgattcttgtagcaagtcctcttacttcagc |
586 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |
|
|
| T |
31127222 |
ccctaacgattcttgtggcgagtcctcttacttcagc |
31127186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University