View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202-Insertion-3 (Length: 576)
Name: NF5202-Insertion-3
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 28 - 576
Target Start/End: Original strand, 37820385 - 37820927
Alignment:
| Q |
28 |
ccacaagggagtaacaaatgtcattttttcacaatcttctttgatttagaccgattgctacgcacctctctcgttttctatctaaagcttccattaattt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37820385 |
ccacaagggagtaacaaatgtcattttttcacaatcttctttgatttagaccgattgctacgaacctctctcgttttctatctaaagcttccattaattt |
37820484 |
T |
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| Q |
128 |
tttggcctcatcaattgtttggtttaatcggagaactcaacttgagccactccttttcacatccactcaaataacgtttcaaaagtctcatgtcgcactt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37820485 |
tttggcctcatcaattgtttggtttaatcggagaactcaacttgagccactccttttcacatccactcaaaatacgtttcaaaagtctcatgtcgcactt |
37820584 |
T |
|
| Q |
228 |
gctaccactaaataaat-gggcagaatatcgaactatgattttgtcccattaattttgtttttgacaaattgtcccttttaaaatttaaaaacgtaagat |
326 |
Q |
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| T |
37820585 |
gctaccactaaataaatggggcagaatatcgaactataattttgtcccattaattttgtttttgacaaattgtcccttttaaaatttaaaaacgt----- |
37820679 |
T |
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| Q |
327 |
tcggacatcaaaattattttcaaaccactcttatcttttacaaggtgtaattaagaccataacatgaatagtgaaattactaaagtggagagagtcggag |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
37820680 |
----acatcaaaattattttcaaaccactcttatcttttacaaggtgtaattaagaccataacatgaatagtgaaattactaaagtggagagtgtcagag |
37820775 |
T |
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| Q |
427 |
gtccggaggaagagattcgtcatcactcgaggctttgtggatgcatgatacgatgttttcacggcaataagttagcgttagaagactcattcacaattat |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37820776 |
gtccggaggaagagattcgtcatcactcgaggctttgtggatgcatgatacgatgttttcactgcaataagttagcgttagaagactcattcacaattat |
37820875 |
T |
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| Q |
527 |
ctctaac--nnnnnnnggcagatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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| T |
37820876 |
ctctaactttttttttggcagatagaagagatgacaaaaccatcataaactc |
37820927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 24197829 - 24197861
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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| T |
24197829 |
agatagaagagatgacaaaaccatcataaactc |
24197861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Complemental strand, 31291346 - 31291314
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
31291346 |
agatagacgagatgacaaaaccatcataaactc |
31291314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 544 - 574
Target Start/End: Complemental strand, 31812338 - 31812308
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaac |
574 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31812338 |
agatagaagagatgacaaaaccatcataaac |
31812308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 12964495 - 12964527
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
12964495 |
agatagaagagatgacaaaactatcataaactc |
12964527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 32057725 - 32057757
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
32057725 |
agatagacgagatgacaaaaccatcataaactc |
32057757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Complemental strand, 37759556 - 37759524
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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| T |
37759556 |
agatagaagagatgacaaagccatcataaactc |
37759524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 22382334 - 22382366
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
22382334 |
agatagacgagatgacaaaaccatcataaactc |
22382366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 22914360 - 22914392
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
22914360 |
agatagacgagatgacaaaaccatcataaactc |
22914392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Complemental strand, 22999202 - 22999170
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
22999202 |
agatagacgagatgacaaaaccatcataaactc |
22999170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 37186818 - 37186850
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
37186818 |
agatagaagagatgacaaagccatcataaactc |
37186850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 45751028 - 45751060
Alignment:
| Q |
544 |
agatagaagagatgacaaaaccatcataaactc |
576 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
45751028 |
agatagatgagatgacaaaaccatcataaactc |
45751060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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