View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202-Insertion-4 (Length: 568)
Name: NF5202-Insertion-4
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 34276225 - 34276546
Alignment:
| Q |
8 |
ttgaatgctgctgatgatgatgaaaaagagttcaaattttttcagttatcattacattatcaataaattacatgataataatgataatcaattttttatt |
107 |
Q |
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| T |
34276225 |
ttgaatgctgctgatgatgatgaaaaagagttcaagttttttcagttatcattacattatcaataaattacataataataatgataataaattttttatt |
34276324 |
T |
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| Q |
108 |
gtaaaagaaaactagtattaatttacttaatttatcgtatgtaattcttcatagaaagtgggtagagctttcttattgkaatgtcatgkttggacttttg |
207 |
Q |
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| T |
34276325 |
gtaaaagaaaactagtattaatttacttaatttatcgtatgtaattcttcgtagaaggtgggtagagctttcttattgtaatgtcatgtttggacttttg |
34276424 |
T |
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| Q |
208 |
tagttaaattttagttaaccgaagaaaactaaattcaaatctaaatgacttagatcaaagttagagcggttagtagtcttgcgttctatctccgacatca |
307 |
Q |
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| T |
34276425 |
tagttaaattttagttaatcgaagaaaactaaattcaaatctaaatgactt-------agttagagcggttagtagtcttgcgttctatctccgacatca |
34276517 |
T |
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| Q |
308 |
aaacacataatcttagtattttcttatga |
336 |
Q |
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| T |
34276518 |
aaacacataatcttagtattttcttatga |
34276546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 327 - 503
Target Start/End: Original strand, 34276730 - 34276907
Alignment:
| Q |
327 |
tttcttatgatgtattcgtaaaastccatgctttaacgatcatgcattgtttattccggtatagtaaacgctataggaattttgcctaaaaatatatggg |
426 |
Q |
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| T |
34276730 |
tttcttatgatgtattcgtaaaagtccatgctttaacgatcatgcattgtttattccgatatagtaaacactataggaattttgcctaaaaatatatggg |
34276829 |
T |
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| Q |
427 |
aagcagtcccgccttgagtttcacatagatgagtatatcaagagtgcatagttaggtact--ccgtccactatattaac |
503 |
Q |
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| T |
34276830 |
aagcagtcccaccttgagtttcacatagatgagtatatcaagagtac-tcattaggtacttcccgtccactatattaac |
34276907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 34277489 - 34277560
Alignment:
| Q |
498 |
attaacactctagcatgttcgtaatttgt-attactcgttgaatctgattcttaggatttttagtcgtttag |
568 |
Q |
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| T |
34277489 |
attaacactttagcatgttcgtaatttgttattactcgttgaatctgattcttaggatttttagtcttttag |
34277560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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