View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5202-Insertion-5 (Length: 468)
Name: NF5202-Insertion-5
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Original strand, 23383785 - 23384242
Alignment:
| Q |
10 |
tattcggttaatattgacattagaagatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaactttta |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23383785 |
tattcggttaatattgacattagaggatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaactttta |
23383884 |
T |
|
| Q |
110 |
ccggatatccaatacaaccgttaaaacaaaagcaaagatatgaatatgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagttctgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23383885 |
ccggatatccaatacaaccgttaaaacaaaagcaaagatatgaatttgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagctctgg |
23383984 |
T |
|
| Q |
210 |
tgtgcaaatttatgcactctcccctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23383985 |
tgtgcaaatttatgcactctcccctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagat |
23384084 |
T |
|
| Q |
310 |
tcgtgtgatagttatgcaatgtgtggtgttaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23384085 |
tcgtgtgatagttatgcaatgtgtggtgctaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttc |
23384184 |
T |
|
| Q |
410 |
cagaacagtggaatatatcatattggtctagtggttgtgttccgagaattaagtcttt |
467 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23384185 |
tcgaacagtggaatatatcatattggtctagtggttgtgttccgaaaattaagtcttt |
23384242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Complemental strand, 23343458 - 23343001
Alignment:
| Q |
10 |
tattcggttaatattgacattagaagatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaactttta |
109 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23343458 |
tattcggtaaatattgacattagaggatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaactttta |
23343359 |
T |
|
| Q |
110 |
ccggatatccaatacaaccgttaaaacaaaagcaaagatatgaatatgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagttctgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
23343358 |
ccggatatccaatacaaccgttaaaacaaaagcaaagatatgaatttgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagctctgg |
23343259 |
T |
|
| Q |
210 |
tgtgcaaatttatgcactctcccctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23343258 |
tgtgcaaatttatgcactctcccctttgggaaatatgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagat |
23343159 |
T |
|
| Q |
310 |
tcgtgtgatagttatgcaatgtgtggtgttaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23343158 |
tcgtgtgatagttatgcaatgtgtggtgctaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttc |
23343059 |
T |
|
| Q |
410 |
cagaacagtggaatatatcatattggtctagtggttgtgttccgagaattaagtcttt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
23343058 |
acgaacagtggaatatatcatattggtctagtggttgtgttccgaaaattaagtcttt |
23343001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 35 - 459
Target Start/End: Complemental strand, 23287949 - 23287525
Alignment:
| Q |
35 |
gatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaacttttaccggatatccaatacaaccgttaaa |
134 |
Q |
| |
|
||||||| ||| ||||| | |||||||| || | |||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| || || |
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|
| T |
23287949 |
gatatccacaagtagttataatgaaggggtccgccataaaattgagagtaggatcatggaatggtcgctcttttaccggatatccaacacaaccattgaa |
23287850 |
T |
|
| Q |
135 |
acaaaagcaaagatatgaatatgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagttc--tggtgtgcaaatttatgcactctccc |
232 |
Q |
| |
|
| | ||||||| || ||||| |||||| ||||||||||||||||||||| | |||||| || ||||||| || || | ||| || || ||| |||| |
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|
| T |
23287849 |
agagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgttgatagatcaatgatttgcgtatatag--actgtccc |
23287752 |
T |
|
| Q |
233 |
ctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagattcgtgtgatagttatgcaatgtg |
332 |
Q |
| |
|
| ||||||||||| |||||| |||||||||| | ||||| |||||||| ||| | || | | ||||||||| ||||||| |||||||||||| |
|
|
| T |
23287751 |
ttacaggaaatttgcaggctttatgttggacaagtcattcaagctcaaggatagttatctacaccgacgcggaagattcatgtgataattatgcaatgtg |
23287652 |
T |
|
| Q |
333 |
tggtgttaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttccagaacagtggaatatatcatat |
432 |
Q |
| |
|
||||| |||||| ||||||||||||| | ||||| || |||||||||||| | ||| ||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
23287651 |
tggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatcatat |
23287552 |
T |
|
| Q |
433 |
tggtctagtggttgtgttccgagaatt |
459 |
Q |
| |
|
|||||| |||| || ||||||| |||| |
|
|
| T |
23287551 |
tggtctggtggctgcgttccgaaaatt |
23287525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 35 - 459
Target Start/End: Original strand, 23391439 - 23391863
Alignment:
| Q |
35 |
gatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaacttttaccggatatccaatacaaccgttaaa |
134 |
Q |
| |
|
||||||| ||| ||||| | |||||||| || | |||| ||||||| ||||||| ||||| |||| ||||||| |||||||||| |||||| ||||| |
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|
| T |
23391439 |
gatatccccaagtagttataatgaaggggtccgccataaaattgagagtaggatcgtggaacggtcgctcttttacgggatatccaacacaaccattaaa |
23391538 |
T |
|
| Q |
135 |
acaaaagcaaagatatgaatatgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagttc--tggtgtgcaaatttatgcactctccc |
232 |
Q |
| |
|
| | ||||||| || ||||| |||||| ||||||||||||||||||||| | |||||| || ||||||| || || | ||| || || ||| |||| |
|
|
| T |
23391539 |
aaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgttgatagatcaatgatttgcgtatatag--actgtccc |
23391636 |
T |
|
| Q |
233 |
ctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagattcgtgtgatagttatgcaatgtg |
332 |
Q |
| |
|
| ||||||||||| |||||| |||||||||| | | ||| |||||||| ||| | || | | ||||||||| ||||||| |||||||||||| |
|
|
| T |
23391637 |
ttacaggaaatttgcaggctttatgttggacaagtcattctagctcaaggatagttatctacaccgtcgcggaagattcatgtgataattatgcaatgtg |
23391736 |
T |
|
| Q |
333 |
tggtgttaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttccagaacagtggaatatatcatat |
432 |
Q |
| |
|
||||| |||||| ||||||||||||| | ||||| || |||||||||||| | ||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23391737 |
tggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatcatat |
23391836 |
T |
|
| Q |
433 |
tggtctagtggttgtgttccgagaatt |
459 |
Q |
| |
|
|||||| ||||||||||||||| |||| |
|
|
| T |
23391837 |
tggtctggtggttgtgttccgaaaatt |
23391863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 445
Target Start/End: Complemental strand, 23363489 - 23363373
Alignment:
| Q |
329 |
tgtgtggtgttaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttccagaacagtggaatatatc |
428 |
Q |
| |
|
||||||||| | |||| ||||||||||||| | ||||||||| | |||||||| | ||||| ||||||||||||||||| |||| ||| | ||||| |
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|
| T |
23363489 |
tgtgtggtggttattctatatgcaatatggatggaaatgttcccacttgtgaatgtgtgaaaggctatgttcctaagtttcctcaacaatggcaaatatc |
23363390 |
T |
|
| Q |
429 |
atattggtctagtggtt |
445 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
23363389 |
atatcagtctaatggtt |
23363373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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