View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5202-Insertion-6 (Length: 438)

Name: NF5202-Insertion-6
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5202-Insertion-6
NF5202-Insertion-6
[»] chr7 (2 HSPs)
chr7 (8-438)||(28266226-28266658)
chr7 (254-290)||(31020716-31020752)
[»] chr6 (4 HSPs)
chr6 (238-303)||(34625716-34625781)
chr6 (238-303)||(34598519-34598585)
chr6 (251-290)||(14244052-14244091)
chr6 (265-297)||(7564182-7564214)
[»] chr4 (2 HSPs)
chr4 (248-303)||(12709995-12710050)
chr4 (256-297)||(32369930-32369971)
[»] chr8 (4 HSPs)
chr8 (256-297)||(2517107-2517148)
chr8 (261-304)||(29096951-29096994)
chr8 (257-303)||(1979413-1979459)
chr8 (264-297)||(10170404-10170437)
[»] chr5 (3 HSPs)
chr5 (256-311)||(9895147-9895202)
chr5 (248-304)||(18542221-18542278)
chr5 (266-311)||(28322251-28322296)
[»] chr3 (2 HSPs)
chr3 (262-304)||(49636837-49636879)
chr3 (261-297)||(36301998-36302034)
[»] chr2 (2 HSPs)
chr2 (262-303)||(5461181-5461222)
chr2 (259-296)||(5526792-5526829)
[»] scaffold0027 (1 HSPs)
scaffold0027 (257-289)||(145921-145953)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 28266226 - 28266658
Alignment:
Q  8 aactccgcattccgataatggattcatattctttgaagtccgtattcgatttgcctcaaccatttcaatcatgttttagtttcaggtactatacactttt 107  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266226 aactccgcattcccataatggattcatattctttgaagtccgtatttgatttgcctcaaccatttcaatcatgttttagtttcaggtactatacactttt 28266325  T
Q  108 cttttaatatgtgtgagagatataataggttgctactagatatgcttagcttcctcgaagcttttaacccgtatcatattttacgaagcactgacatgac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28266326 cttttaatatgtgtgagagatataataggttgctactagatatgcttagctgcctcgaagcttttaacctgtatcatattttacgaagcactgacatgac 28266425  T
Q  208 acatacacggacccttgacacgactttgacacatgacatagatacmtcgacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagt 307  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266426 acagacatggacccttgacacgactttgacacatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagt 28266525  T
Q  308 tggtaccgatgcgtgtcggacacgggggcacacc--taatatcataagtgtctgtgcttcagagaccatattagaaaatggtgctcatttagtacgtatc 405  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266526 tggtaccgatgcgtgtcggacacgggggcacacctataatatcataagtgtctgtgcttcagagaccatattagaaaatggtgctcatttagtacgtatc 28266625  T
Q  406 tttgtgaaataacataataatttgtgatttttc 438  Q
    |||||||||||||||||||||||||||||||||    
T  28266626 tttgtgaaataacataataatttgtgatttttc 28266658  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 31020752 - 31020716
Alignment:
Q  254 tcgacaccggtaataatttgagaaaataaattaattg 290  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  31020752 tcgacaccggtaacaatttgagaaaatgaattaattg 31020716  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 34625716 - 34625781
Alignment:
Q  238 acatgacatagatacmtcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 303  Q
    |||||| || ||||| ||||||||| ||||||||||||||||| ||||||||| |||||| |||||    
T  34625716 acatgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 34598519 - 34598585
Alignment:
Q  238 acatgacatagatacmtc-gacaccggtaataatttgagaaaataaattaattggatgtaaacacat 303  Q
    |||||| || ||||| || ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  34598519 acatgaaattgatacctctgacaccgataataatttgagaaaatgaattaattggatgtaatcacat 34598585  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 14244091 - 14244052
Alignment:
Q  251 acmtcgacaccggtaataatttgagaaaataaattaattg 290  Q
    || |||||||||||| |||||||||||||| |||||||||    
T  14244091 acatcgacaccggtagtaatttgagaaaatgaattaattg 14244052  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
Q  265 aataatttgagaaaataaattaattggatgtaa 297  Q
    |||||||||||||||||||||||||| ||||||    
T  7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 12709995 - 12710050
Alignment:
Q  248 gatacmtcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 303  Q
    ||||| |||| | |||||||||||||||||||||||||||||| | ||||||||||    
T  12709995 gatacgtcgatatcggtaataatttgagaaaataaattaattgaacgtaaacacat 12710050  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
Q  256 gacaccggtaataatttgagaaaataaattaattggatgtaa 297  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 2517107 - 2517148
Alignment:
Q  256 gacaccggtaataatttgagaaaataaattaattggatgtaa 297  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  2517107 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 29096951 - 29096994
Alignment:
Q  261 cggtaataatttgagaaaataaattaattggatgtaaacacatg 304  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  29096951 cggtaataatttaagaaaataaattaattgaatgtaatcacatg 29096994  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 1979413 - 1979459
Alignment:
Q  257 acaccggtaataatttgagaaaataaattaattggatgtaaacacat 303  Q
    |||||||||||||||||||||||| ||||||||  |||||| |||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaatcacat 1979459  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 10170437 - 10170404
Alignment:
Q  264 taataatttgagaaaataaattaattggatgtaa 297  Q
    ||||||||||||||||||||||||||| ||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 9895147 - 9895202
Alignment:
Q  256 gacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggt 311  Q
    |||||| |||||||||||||||||||||||| ||| | |||| |||||| ||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttggt 9895202  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 18542278 - 18542221
Alignment:
Q  248 gatacmtcgacaccggtaataatttgagaaaata-aattaattggatgtaaacacatg 304  Q
    ||||| |||||||| ||||||||||||||||||| || |||||| |||||| ||||||    
T  18542278 gatacatcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatg 18542221  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 28322251 - 28322296
Alignment:
Q  266 ataatttgagaaaataaattaattggatgtaaacacatgagttggt 311  Q
    ||||||||||||||| ||||||||| |||||| |||||| ||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggt 28322296  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 49636879 - 49636837
Alignment:
Q  262 ggtaataatttgagaaaataaattaattggatgtaaacacatg 304  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  49636879 ggtaataatttgagaaaatgaattaattgaatgtaatcacatg 49636837  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
Q  261 cggtaataatttgagaaaataaattaattggatgtaa 297  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 5461222 - 5461181
Alignment:
Q  262 ggtaataatttgagaaaataaattaattggatgtaaacacat 303  Q
    ||||||||||||||| ||||||||||||| |||||| |||||    
T  5461222 ggtaataatttgagataataaattaattgaatgtaatcacat 5461181  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 5526829 - 5526792
Alignment:
Q  259 accggtaataatttgagaaaataaattaattggatgta 296  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  5526829 accggtaataatttgagaaaataaaataattgtatgta 5526792  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 145921 - 145953
Alignment:
Q  257 acaccggtaataatttgagaaaataaattaatt 289  Q
    |||||||||||| ||||||||||||||||||||    
T  145921 acaccggtaatagtttgagaaaataaattaatt 145953  T

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