View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202-Insertion-8 (Length: 264)
Name: NF5202-Insertion-8
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 41337700 - 41337961
Alignment:
| Q |
8 |
ttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgcta |
107 |
Q |
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| T |
41337700 |
ttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgcta |
41337799 |
T |
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| Q |
108 |
aataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgcagcta-----gatttcaagactaataatctatataagttagca |
202 |
Q |
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| T |
41337800 |
aataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgtagctagatatgatttcaagactaataatctatataagttagaa |
41337899 |
T |
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| Q |
203 |
gatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctag |
264 |
Q |
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| T |
41337900 |
gatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctag |
41337961 |
T |
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 36136230 - 36136327
Alignment:
| Q |
54 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
151 |
Q |
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| T |
36136230 |
aatgtaattttgataaacaaaatctccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
36136327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 36136154 - 36136191
Alignment:
| Q |
8 |
ttaagagcattgatatttttccacttttgagtgtgata |
45 |
Q |
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| T |
36136154 |
ttaagagcaatgatatttttccacttttgagtgtgata |
36136191 |
T |
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