View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_high_11 (Length: 250)
Name: NF5202_high_11
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 17999803 - 17999653
Alignment:
| Q |
89 |
atgtatggatcttagatatttacctgcacttgtaagagcttgaaggaggttggctttttgtctcaaattgagagttgtttcaaaataatcatgttgctta |
188 |
Q |
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| T |
17999803 |
atgtatggatcttagatatt-acctgcacttgtaagagcttgaaggaggtttgctttttgtctcaagttgagagttgtttcaaaataatcatgttgctta |
17999705 |
T |
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| Q |
189 |
agaactgattctgagcaagtaccatgtttctcccattcatgtgtccagaatt |
240 |
Q |
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| T |
17999704 |
agaactgattctgaacaagtaccatgtttctcccattcatgtgtccagaatt |
17999653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 18006921 - 18006786
Alignment:
| Q |
100 |
ttagatatttacctgcacttgtaagagcttgaaggaggttggctttttgtctcaaattgagagttgtttcaaaataatcatgttgcttaagaactgattc |
199 |
Q |
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| T |
18006921 |
ttagatatttacctgcacttgtaagagcttggaggaggttggctttttgtctcaaattgagagttgtttcaaaatagtcatgttgacttagcactgattc |
18006822 |
T |
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| Q |
200 |
tgagcaagtaccatgtttctcccattcatgtgtcca |
235 |
Q |
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| T |
18006821 |
agagcaagtaccatgtttctcccattcatgggtcca |
18006786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17999995 - 17999961
Alignment:
| Q |
1 |
tgtcacaaaatcaatattttcttagtaatttggtt |
35 |
Q |
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| T |
17999995 |
tgtcacaaaatcaatcttttcttagtaatttggtt |
17999961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 18029189 - 18029115
Alignment:
| Q |
165 |
gtttcaaaataatcatgttgcttaagaactgattctgagcaagtaccatgtttctcccattcatgtgtccagaat |
239 |
Q |
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| T |
18029189 |
gtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgaccagaat |
18029115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 17999864 - 17999836
Alignment:
| Q |
64 |
gcggatggaccagcgcgtcactttaatgt |
92 |
Q |
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| T |
17999864 |
gcggatggaccagcgcgtcactttaatgt |
17999836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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