View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_high_19 (Length: 225)
Name: NF5202_high_19
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47430868 - 47430644
Alignment:
| Q |
1 |
atgacaaagtaatcaaacggatgtttggtaacatcgtagatttaccaaaatcacagcgatccacaatgatttttaaaaagctacacttggtaacttatgc |
100 |
Q |
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| T |
47430868 |
atgacaaagtaatcaaatggatgtttggtaagatcgtagattttccaaaaccacggcgatccacaatgatttttaaaaagctacacttggtagcttctgc |
47430769 |
T |
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| Q |
101 |
aaaatcatagtgagtcaccgtgttaacaaacatatactactctaatgctgatgacaaacaaatatatgacattaagaaagagag---agagtgaaattca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47430768 |
aaaatcatagtgagtcaccgtgttaacaaacatatactactctaatgctgatgacaaacaaatatatgacattaagaaagagagatcagagtgaaattca |
47430669 |
T |
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| Q |
198 |
cattcagattcagggatgacacatg |
222 |
Q |
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| T |
47430668 |
cattcagattcagggatgacacatg |
47430644 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 32028232 - 32028281
Alignment:
| Q |
58 |
gatccacaatgatttttaaaaagctacacttggtaacttatgcaaaatca |
107 |
Q |
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| T |
32028232 |
gatccactatgatttttcaaaagctacactttatagcttatgcaaaatca |
32028281 |
T |
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