View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_high_2 (Length: 422)
Name: NF5202_high_2
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 9835743 - 9835346
Alignment:
| Q |
19 |
gaacacccttaggagcttttcatcagaacgagaattctcaatggtgatcacatcagcatccatgtcaatgattgagtggatgatatcattgaagtgagag |
118 |
Q |
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| T |
9835743 |
gaacacccttaggagcttttcatcagaacgagaattctcaatggtgatcacatcagcatccatgtcaatgattgagtggatgatatcattgaagtgagag |
9835644 |
T |
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| Q |
119 |
tagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgtaagttaattaactatagatgtaatgtaacattttatgactttatcatatga |
218 |
Q |
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| T |
9835643 |
tagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgtaagttaattaactatagat-----gtaacattttttaactttataatatga |
9835549 |
T |
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| Q |
219 |
a-tttact---tcatacattagaatgg--nnnnnnnntctgatcatgttttgtattacaaagcatagacacggacaccagacacaacactgacacataaa |
312 |
Q |
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| T |
9835548 |
attttacttcgtcatacattagaagggaaaagaaaaattggatcatgttttgtattacaaagcatagacacggacaccagacacaacactgatacgtaaa |
9835449 |
T |
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| Q |
313 |
atttgatcatgtgtgtgagccattgacacgtgactc-acaccgaccaatgatttgaagtgtcagtgcttcatatttgtaaattagaagtacctgagtatt |
411 |
Q |
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| T |
9835448 |
atctgatcatgtgtgtgagccatttacacgtgactctaacccgaccaatgatttgaagtgtcagtgcttcgtatttgtaatttagaagtacctgagtagt |
9835349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 33466658 - 33466773
Alignment:
| Q |
32 |
agcttttcatcagaacgagaattctcaatggtgatcacatcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtggg |
131 |
Q |
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| T |
33466658 |
agcttttcgtcggaacgggagttctcaattgtgataacatcagcatccatattaatgatggaatgaatgatgtcgttgaagttggagtagcacatgtgag |
33466757 |
T |
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| Q |
132 |
tgtggatctgtcaatt |
147 |
Q |
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| T |
33466758 |
tgtggatctgtcaatt |
33466773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 35948290 - 35948202
Alignment:
| Q |
53 |
ttctcaatggtgatcacatcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctg |
141 |
Q |
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| T |
35948290 |
ttctcaatagtgatcacatctgcatccatatctatgattgagtgaatgatgtcattgaagtttgagtagcacatgtgagtgtgaatctg |
35948202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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