View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_high_7 (Length: 264)
Name: NF5202_high_7
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 31078666 - 31078933
Alignment:
| Q |
2 |
ctgagatattagttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaattacatatacaacttttccacattttac |
101 |
Q |
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| T |
31078666 |
ctgatatattagttaagaaagttaaaagtgaaaaaatttcattaaaaaccacatattcttaattttaaaaagttaaatatacaacttttccacattttac |
31078765 |
T |
|
| Q |
102 |
attacaatgtttc-------------ttagcatttctcataaaagtaaatgttgcataaatatgttccaaaagttccaacgtcaaaacatactcattatc |
188 |
Q |
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| T |
31078766 |
attacaatgtttctatattagttttcttagcatttctcataaaagtaaatgttgcataaatatgttccaaaggttccaacgtcaaaacatactcattatc |
31078865 |
T |
|
| Q |
189 |
ttgtatagaatatgt--ttggtatcacaccaaatttgccaaaatcataatattcatcgtgatgttcat |
254 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078866 |
ttgtatagaatatgtaattggtatcacaccaaatttgccaaaatcataatattcatcgtgatgttcat |
31078933 |
T |
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Back To:
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 24123380 - 24123320
Alignment:
| Q |
13 |
gttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaa |
73 |
Q |
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||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||||||| |
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| T |
24123380 |
gttaaaaaagttaaaagtagaaaattttaattgaaaacaacaaattcttgattttaaaaaa |
24123320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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