View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5202_low_1 (Length: 610)

Name: NF5202_low_1
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5202_low_1
NF5202_low_1
[»] chr8 (4 HSPs)
chr8 (39-595)||(32536156-32536693)
chr8 (36-240)||(18481113-18481317)
chr8 (38-110)||(26440816-26440888)
chr8 (36-116)||(7251110-7251190)
[»] chr3 (11 HSPs)
chr3 (36-240)||(51976640-51976844)
chr3 (36-240)||(36684785-36684989)
chr3 (36-238)||(8705594-8705796)
chr3 (36-238)||(9057481-9057683)
chr3 (47-200)||(49758956-49759109)
chr3 (10-230)||(45736356-45736577)
chr3 (85-238)||(26390803-26390956)
chr3 (36-186)||(4978441-4978591)
chr3 (64-116)||(25131088-25131140)
chr3 (39-109)||(38998918-38998988)
chr3 (55-100)||(47165391-47165436)
[»] chr2 (4 HSPs)
chr2 (36-240)||(24543093-24543297)
chr2 (36-240)||(29894348-29894552)
chr2 (36-240)||(36364920-36365124)
chr2 (65-116)||(12555415-12555466)
[»] chr1 (9 HSPs)
chr1 (36-240)||(11351624-11351828)
chr1 (36-231)||(6784167-6784362)
chr1 (51-240)||(20639470-20639659)
chr1 (36-224)||(21515101-21515287)
chr1 (38-116)||(44839886-44839964)
chr1 (36-116)||(2536509-2536589)
chr1 (93-172)||(32988972-32989051)
chr1 (38-109)||(51080701-51080772)
chr1 (36-75)||(52823500-52823539)
[»] chr7 (3 HSPs)
chr7 (10-240)||(23820403-23820634)
chr7 (136-238)||(24808878-24808980)
chr7 (38-116)||(21118399-21118476)
[»] chr6 (2 HSPs)
chr6 (50-240)||(942573-942763)
chr6 (36-116)||(4513076-4513156)
[»] chr5 (3 HSPs)
chr5 (36-186)||(41197383-41197533)
chr5 (46-232)||(36779439-36779623)
chr5 (36-119)||(30376454-30376537)
[»] chr4 (6 HSPs)
chr4 (36-240)||(43989285-43989488)
chr4 (54-200)||(19315935-19316081)
chr4 (36-102)||(43813198-43813264)
chr4 (54-116)||(1394129-1394191)
chr4 (64-109)||(49407130-49407175)
chr4 (67-115)||(9633063-9633111)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 39 - 595
Target Start/End: Original strand, 32536156 - 32536693
Alignment:
Q  39 gatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttac 138  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  139 aagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcata 238  Q
    ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  239 ataaaagagtagctgcaatgtcgtgtaaagagtaaagaccaacagcctgtcccacataaacatatcaaagaggagagaaacaatccaactaggaccaaat 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  32536356 ataaaagagtagctgcaatgtcgtgtaaagagtaaagaccaacagcctatcccacataaacatatcaaagaggagagaaacaatccgactaagaccaaat 32536455  T
Q  339 ctgttgtgtttagacacacaatgagatacttcttttaataataaaaataataatttgattgcacattttagagaaatgtgtctctttatgtgtagacagt 438  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |    
T  32536456 atgttgtgtttagacacacaatgagatacttcttttaataataaaaataataatttgattgcacagtttagataaatgtgtctctttatgtgtagacact 32536555  T
Q  439 ctagatctcgtgtgaccatacaagactattgcataccggcaagtgtccaatgcaatacttagtaggtttgtcttgactttagcttaaaaataaaagtatt 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||               
T  32536556 ctagatctcgtgtgaccatacaagactattgcataccggcaagtgtccaatgcaatacttagtaggtttgtcttgacattagctaaaaa----------- 32536644  T
Q  539 agatagtttaaaaataataaatttttgcttgtaataatagtcttgtctcttataatt 595  Q
            |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32536645 --------taaaaataataaatttttgcttgtaatagtagtcttgtctcttataatt 32536693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 18481317 - 18481113
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||| | ||| ||||||||| ||||   |||||||||||||||||| ||||||| ||||||||||| | | ||| |||     
T  18481317 tgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatc 18481218  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  18481217 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 18481118  T
Q  236 ataat 240  Q
    |||||    
T  18481117 ataat 18481113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 26440888 - 26440816
Alignment:
Q  38 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttc 110  Q
    |||||| |||||||||||||| ||| |||| ||||||||| ||||  |||||||||||||||||| |||||||    
T  26440888 agatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagttc 26440816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 7251190 - 7251110
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    |||||||| |||||| ||| |||| || ||| || ||||||   |||  |||||||||||||||||||||||||| |||||    
T  7251190 tgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagttctgaaaa 7251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 51976844 - 51976640
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||| ||| ||||||| ||||||||||| ||| ||| | |     
T  51976844 tgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagttctgaaaattacaatcaaacaactttc 51976745  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  51976744 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 51976645  T
Q  236 ataat 240  Q
    |||||    
T  51976644 ataat 51976640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 36684989 - 36684785
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  36684989 tgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 36684890  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| |||||| |||||||||||||||||||||||  |||| ||||||| |||  | || |||  | ||||| |||||||| ||||||||||||  ||    
T  36684889 tacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtc 36684790  T
Q  236 ataat 240  Q
    |||||    
T  36684789 ataat 36684785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 8705796 - 8705594
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| ||||||||| ||||||||  ||||||| ||||| ||||  |||||||||||||||||| ||||||| ||||||||||| ||| ||| |       
T  8705796 tgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcc 8705697  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||| ||    
T  8705696 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtc 8705597  T
Q  236 ata 238  Q
    |||    
T  8705596 ata 8705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 9057683 - 9057481
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| ||||||||| ||||||||  ||||||| ||||| ||||  |||||||||||||||||| ||||||| ||||||||||| ||| ||| |       
T  9057683 tgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcc 9057584  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||| ||    
T  9057583 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtc 9057484  T
Q  236 ata 238  Q
    |||    
T  9057483 ata 9057481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 49758956 - 49759109
Alignment:
Q  47 taccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctga 146  Q
    ||||||||  |||||| |||||| ||||||| ||||  ||||||||||| |||||||||||||| ||||||||||||||| |||     |||||||||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  147 ataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctaca 200  Q
    ||||| |||||||||||||||||||| ||||| ||||||| ||| |||| ||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaacgatataca 49759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 45736577 - 45736356
Alignment:
Q  10 acatcatcataaatgtgtga-ttagagtgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagt 108  Q
    ||||||||||||| ||| || ||||  |||||||  |||||||||||||||| |||||||  ||||||    ||  |||||||||||||||||| |||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  109 tcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagactt 208  Q
    || ||||||||||| | | |||||   |||||  || |||||||||||||| |||||| ||||| ||||||||| ||| ||| || |  |||  | ||||    
T  45736477 tctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaactt 45736378  T
Q  209 gtaatccaaagcaaaatcaaca 230  Q
    | |||||||| |||||||||||    
T  45736377 gaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 238
Target Start/End: Original strand, 26390803 - 26390956
Alignment:
Q  85 tcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatcgtctagatttga 184  Q
    |||||||||||||||||  ||||||   |||| ||||||||| ||| | | ||||||  || ||||| |||||||||||||||||||| ||||| ||| |    
T  26390803 tcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtttca 26390902  T
Q  185 atgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcata 238  Q
     | ||| |||||||||   | |||| ||||||||||||| || |||| ||||||    
T  26390903 gttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 4978441 - 4978591
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||  ||||| |||||||||||| || ||||| ||||  ||||| || |||| |||||||||| ||||||| |||||||| || | | ||| |       
T  4978441 tgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttctgaaaattataaccgaacaagtgcc 4978540  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaat 186  Q
    |||||| | |||||||||||||||||| |||| ||||  |||| |||||||    
T  4978541 tacaagccagaataatacaacctagtttactattatcacctaggtttgaat 4978591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 25131088 - 25131140
Alignment:
Q  64 gagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||||||||    
T  25131088 gagcgaccccattaacttactttctattgaactcgacatgagagttcagaaaa 25131140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 38998988 - 38998918
Alignment:
Q  39 gatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagtt 109  Q
    ||||| |||||||| ||||||||  |||||||||||||| ||||  ||||||| |||||||||| ||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagtt 38998918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 47165391 - 47165436
Alignment:
Q  55 ctaattcacgagcgaccccattaacttgtttcctattgaactcgac 100  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||    
T  47165391 ctaattcacgagcgaccccattgacttgcctcctattgaactcgac 47165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 24543297 - 24543093
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| |||     
T  24543297 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatc 24543198  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  24543197 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 24543098  T
Q  236 ataat 240  Q
    |||||    
T  24543097 ataat 24543093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 29894348 - 29894552
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  29894348 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 29894447  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| ||||||||||||| |||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  29894448 tacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 29894547  T
Q  236 ataat 240  Q
    |||||    
T  29894548 ataat 29894552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 36365124 - 36364920
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||| ||||  ||||  ||||||||||||||||||  |||||| |||||| |||| | | ||| |       
T  36365124 tgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagttctgaaaatgacaatcgaacaactgcc 36365025  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    ||||||| ||||||||||||||||||||||| |||||  |||| ||||||| ||| || || |||  ||||||| |||||||| ||||||||||||  ||    
T  36365024 tacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttggaatccaaaacaaaatcaacattgtc 36364925  T
Q  236 ataat 240  Q
    |||||    
T  36364924 ataat 36364920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 12555415 - 12555466
Alignment:
Q  65 agcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    ||||||||||||||||||  |||||||||||| ||||| ||||||| |||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaa 12555466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 11351624 - 11351828
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  11351624 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 11351723  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  11351724 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 11351823  T
Q  236 ataat 240  Q
    |||||    
T  11351824 ataat 11351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 6784362 - 6784167
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    ||||||||||||||||||| |||||||  ||||||||||||  ||||  |||||||||||||||||| ||||||| |||||| |||| | | ||| | |     
T  6784362 tgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaataacaatcgaacaactgtc 6784263  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacat 231  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||| ||| ||| || || |||  ||||||| |||||||| ||||||||||||    
T  6784262 tacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagacttgcaatccaaaacaaaatcaacat 6784167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 51 - 240
Target Start/End: Complemental strand, 20639659 - 20639470
Alignment:
Q  51 ctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataa 150  Q
    |||||||||||| ||| |||| ||||  ||||  ||||||||||||| |||| ||||||| ||||||||||| | | ||| |   |||||| ||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  151 tacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcataat 240  Q
    ||||||||||||||||||||||  |||| ||||||| |||  | || |||  | ||||| |||||||| ||||||||||||  |||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataat 20639470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 21515287 - 21515101
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  ||||||||||||||||||  |||||| ||||||||||  | | ||| |       
T  21515287 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagttctgaaaattacattcgaacaactgcc 21515190  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaa 224  Q
    |||||  ||||| |||||||||||||||||| |||||  |||| ||||||| ||| || || |||  ||||||| |||||||| |||||    
T  21515189 tacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttgcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 44839886 - 44839964
Alignment:
Q  38 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||| ||||||| |||||    
T  44839886 agatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctgaaaa 44839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 2536509 - 2536589
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    |||||||| ||||||||| |||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| |||||    
T  2536509 tgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaa 2536589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 32988972 - 32989051
Alignment:
Q  93 aactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatc 172  Q
    |||||||||| ||||||| |||| |||||| | | ||| |   ||||||||||||||||||||||||||||||| |||||    
T  32988972 aactcgacatgagagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatc 32989051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 51080701 - 51080772
Alignment:
Q  38 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagtt 109  Q
    |||||| |||||||| ||||||||| ||||||||||||||  |||  ||||||| |||||||||| ||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagtt 51080772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 52823500 - 52823539
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccat 75  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  52823500 tgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 23820634 - 23820403
Alignment:
Q  10 acatcatcataaatgtgtgat-tagagtgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagt 108  Q
    ||||||||||||||||| ||  |||  ||||||||| |||||||| |||||||| |||||||||||||  ||||  ||||||||||||||| || |||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  109 tcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagactt 208  Q
    || ||||||||||| ||| ||| |   |||||  |||||| |||||||||||||||||||||||  |||| ||||||| |||| |  | |||  ||||||    
T  23820534 tctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagactt 23820435  T
Q  209 gtaatccaaagcaaaatcaacatgatcataat 240  Q
    | |||||||| |||||| |||||| |||||||    
T  23820434 ggaatccaaaacaaaattaacatggtcataat 23820403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 24808878 - 24808980
Alignment:
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||| |||  ||||||| |||| ||| ||||||||||||| ||    
T  24808878 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttggaatctaaaacaaaatcaacatggtc 24808977  T
Q  236 ata 238  Q
    |||    
T  24808978 ata 24808980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 21118476 - 21118399
Alignment:
Q  38 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    |||||| ||||||||||||||  || ||| |||| ||||| ||||  |||||||||||||||||| ||||||| |||||    
T  21118476 agatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaa 21118399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 942763 - 942573
Alignment:
Q  50 cctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaata 149  Q
    |||||||||||||||||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| |   |||||| |||||||    
T  942763 cctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagttctgaaaattacaatcgaacaactgcctacaagcctgaata 942664  T
Q  150 atacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcataat 240  Q
    |||||||||||||||||||||||  |||| ||||| | |||  | || |||  ||||||| |||||||| ||||||||||||  |||||||    
T  942663 atacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataat 942573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 4513156 - 4513076
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    |||||||| ||||||||||||||||||  ||||||||||||  ||||  |||||||||||||||||| ||||||| |||||    
T  4513156 tgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaa 4513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 41197383 - 41197533
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||| ||||||||||| | | ||| | |     
T  41197383 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagttctgaaaattacaatcgaacaactgtc 41197482  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaat 186  Q
    || ||| || ||||||||||||||||||||| |||||  |||| |||||||    
T  41197483 tataagcctaaataatacaacctagttcactgctatcacctaggtttgaat 41197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 36779439 - 36779623
Alignment:
Q  46 ctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctg 145  Q
    |||||||||||||| || ||| ||| | |||  ||||  |||||||| ||||||||| ||||||| |||  |||||| ||| ||| |   |||||| ||     
T  36779439 ctaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagttctgaa--ttacaaccaaacaactgcctacaagcctt 36779536  T
Q  146 aataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatg 232  Q
    |||||||||||||||||||||||| ||   ||| ||||||| ||| || || ||| |||||||| ||||||||  ||||||||||||    
T  36779537 aataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagacttggaatccaaaataaaatcaacatg 36779623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 30376454 - 30376537
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaatta 119  Q
    |||||||  |||||| ||||||||||| ||||||||| |||  ||||  |||||||||||||||||||||||||  ||||||||    
T  30376454 tgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagttttgaaaatta 30376537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 43989285 - 43989488
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 135  Q
    |||||||| ||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||||||| || ||||  ||||| |||| | | ||||| |     
T  43989285 tgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgttctaaaaat-acaatcgaacaattgtc 43989383  T
Q  136 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 235  Q
    | |||| |||||||||||||||||||||||| |||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||  ||    
T  43989384 tgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtc 43989483  T
Q  236 ataat 240  Q
    |||||    
T  43989484 ataat 43989488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 19315935 - 19316081
Alignment:
Q  54 gctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatac 153  Q
    ||||||||| || |||| |||||  ||||  |||||||||||||||||| ||||||| ||||| |   | ||| ||| ||| ||||||  || ||||| |    
T  19315935 gctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagttctgaaaactgttaacaaacaactatctacaagcatgtataatgc 19316034  T
Q  154 aacctagttcactactatcgtctagatttgaatgaaagcgatctaca 200  Q
    ||||||| ||||||||||| |||| |||||| | |||| ||||||||    
T  19316035 aacctagctcactactatcatctacatttgacttaaagtgatctaca 19316081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 43813198 - 43813264
Alignment:
Q  36 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacat 102  Q
    |||||||| ||||||||| |||||||| || |||||||||| |||||| | ||||||||||||||||    
T  43813198 tgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacat 43813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 1394191 - 1394129
Alignment:
Q  54 gctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 116  Q
    ||||||||| || ||||||||||| ||||  |||||||||||||||||| ||||||| |||||    
T  1394191 gctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaa 1394129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 49407130 - 49407175
Alignment:
Q  64 gagcgaccccattaacttgtttcctattgaactcgacataagagtt 109  Q
    ||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  49407130 gagcgaccctatttacttgcttcctattgaacttgacataagagtt 49407175  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 9633111 - 9633063
Alignment:
Q  67 cgaccccattaacttgtttcctattgaactcgacataagagttcagaaa 115  Q
    |||||||||| |||||  |||||||||||||||||| ||||||| ||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttctgaaa 9633063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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