View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_10 (Length: 252)
Name: NF5202_low_10
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 45 - 252
Target Start/End: Complemental strand, 41337624 - 41337417
Alignment:
| Q |
45 |
acagaatcatctttgataaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
144 |
Q |
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| T |
41337624 |
acagaatcatctttgataaaagaattgtttcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
41337525 |
T |
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| Q |
145 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgcataccataacagaactttgaagcaataagaaagctttctgtgag |
244 |
Q |
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| T |
41337524 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaagcaataagaaagctttctgtgag |
41337425 |
T |
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| Q |
245 |
cagcaagt |
252 |
Q |
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| T |
41337424 |
cagcaagt |
41337417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 62 - 252
Target Start/End: Complemental strand, 36136061 - 36135863
Alignment:
| Q |
62 |
aaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgc--------cccaggttgttgttttcctgcagaggatcaataatat |
153 |
Q |
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| T |
36136061 |
aaaagaattgttccgatgaaggttttaaagttatatacctttactgatgctacgcggctacgccccaggttgttgcttgcccgcagagaatcaataatat |
36135962 |
T |
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| Q |
154 |
tgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgcataccataacagaactttgaagcaataagaaagctttctgtgagcagcaagt |
252 |
Q |
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| T |
36135961 |
tgatgtgtttggaaacaaaatgcttctcgtgattttcctggttgcaccaaccataacagaacttacaagcaataagaaagctttctgtgagcagtaagt |
36135863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 36136158 - 36136129
Alignment:
| Q |
18 |
cttaagaatatactgcagacacttcataca |
47 |
Q |
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| T |
36136158 |
cttaagaatatactgcagacacttcataca |
36136129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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