View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_13 (Length: 241)
Name: NF5202_low_13
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 15169846 - 15170053
Alignment:
| Q |
20 |
ggtttttggtccgattcctggtttcatgtgtcttatatctctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatt |
119 |
Q |
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| T |
15169846 |
ggtttttggtccgattcctggtttcatgtgtcttatatctctggtggagtttgcttggtccattcttcgtttgttttgggcactatgagggagggagatt |
15169945 |
T |
|
| Q |
120 |
tcttgtgttgttgtttttgtgatggtgttggttatttagttccccctggtagtgttgcagatgtcctttttatgttattgttggggttttttccttggtc |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15169946 |
tcttgtgttgttgtttttgtgatggtgttggttttttagttccccctggtagtgttgcagatgtcctttttatggtattgttggggttttttccttggtc |
15170045 |
T |
|
| Q |
220 |
cacctttg |
227 |
Q |
| |
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|||||||| |
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| T |
15170046 |
cacctttg |
15170053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 15165581 - 15165767
Alignment:
| Q |
22 |
tttttggtccgattcctggtttcatgtgtcttatatctctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttc |
121 |
Q |
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|||||| || |||||||| ||||||||||||||| ||||| |||||| | | |||||||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
15165581 |
tttttgatctgattcctgatttcatgtgtcttatctctctagtggagttggtttggtccattcttcctttgttttgggtgctactagggagggagatttc |
15165680 |
T |
|
| Q |
122 |
ttgtgttgttgtttttgtgatggtgttggttatttagttccccctggtagtgttgcagatgtcctttttatgttattgttggggtttttt |
211 |
Q |
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||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| |||||||||||| ||||||| |||||| |
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| T |
15165681 |
ttg---tgttgtttttgtgacagtgttggttttttagttccccctagtagtgttgcatgtgttctttttatgttactgttgggttttttt |
15165767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 55804572 - 55804366
Alignment:
| Q |
20 |
ggtttttggtccgattcctggtttcatgtgtcttatatctctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatt |
119 |
Q |
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|||||||||| ||| ||||| ||||||||||||||| |||||||||| | | |||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
55804572 |
ggtttttggttcgactcctgatttcatgtgtcttatctctctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatt |
55804473 |
T |
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| Q |
120 |
tcttgtgttgttgtttttgtgatggtgttggttatttagttccccctggtagtgttgcagatgtcctttttatgttattgttggggttttttccttggtc |
219 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
55804472 |
tcttgtgttgttgtttttgtgatggtgttggttttttagtt-cccctagtagtgttgcagatgttctttttatgttattgttggggttttttccttgggc |
55804374 |
T |
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| Q |
220 |
cacctttg |
227 |
Q |
| |
|
|||||||| |
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| T |
55804373 |
cacctttg |
55804366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 29710887 - 29711093
Alignment:
| Q |
20 |
ggtttttggtccgattcctggtttcatgtgtcttatatctctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatt |
119 |
Q |
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|||||||||| ||| | ||| ||||||||||||||| |||||||||| | | |||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
29710887 |
ggtttttggttcgactactgatttcatgtgtcttatctctctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatt |
29710986 |
T |
|
| Q |
120 |
tcttgtgttgttgtttttgtgatggtgttggttatttagttccccctggtagtgttgcagatgtcctttttatgttattgttggggttttttccttggtc |
219 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
29710987 |
tcttgtgttgttgtttttgtgatggtgttggttttttagtt-cccctagtagtgttgcagatgttctttttatgttattgttggggttttttccttgggc |
29711085 |
T |
|
| Q |
220 |
cacctttg |
227 |
Q |
| |
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|||||||| |
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|
| T |
29711086 |
cacctttg |
29711093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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