View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_14 (Length: 241)
Name: NF5202_low_14
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 40392254 - 40392062
Alignment:
| Q |
32 |
gtatgaagtgatcgagatcgacattagacgctgccattgaacaaagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaa |
131 |
Q |
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| T |
40392254 |
gtatgaagtgatcgagatcgacattagactctgccattgaacaaagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaa |
40392155 |
T |
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| Q |
132 |
ctagtaagcatcattatcccttagttcatgttaatcaacaaccacattgaagtttcttatggttctatgtaagttctcactttagaaatgttt |
224 |
Q |
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| T |
40392154 |
ctagtaagcatcattatcccttaattcatgttaatcaacaaccacattgaagtttcttatggttctatgtaagttctcacttcagaaatgttt |
40392062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 54592909 - 54592845
Alignment:
| Q |
158 |
catgttaatcaacaaccacattgaagtttcttatggttctatgtaagttctcactttagaaatgtt |
223 |
Q |
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| T |
54592909 |
catgttaagcaactaccacattgaagtttcttaaggttct-tttaagttctcagtttagaaatgtt |
54592845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 41052100 - 41052133
Alignment:
| Q |
69 |
tgaacaaagacaacaatgtagatgcaaataaatt |
102 |
Q |
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| T |
41052100 |
tgaacaaagacaacaatgtatatgcaaataaatt |
41052133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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