View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_17 (Length: 232)
Name: NF5202_low_17
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 18000037 - 18000231
Alignment:
| Q |
19 |
caaaggagctatacaaaatgcagttggattttctccattcattgaatgtaatgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtg |
118 |
Q |
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| T |
18000037 |
caaaggagctatacaaaatgcagttgggtttgctccattcattgaatgtaatgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtg |
18000136 |
T |
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| Q |
119 |
gacacttctggatcaaacttcattgactgtcctgtgttcccccatggcaaatgtggatctgagattgagttcccaactttttaagtagaagattc |
213 |
Q |
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| T |
18000137 |
gacacttctggatcaaacttcattgactgtcctgtgttcccccatggcaaatgtggatctgagattgagttcccaactttttaagtagaagattc |
18000231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 18007065 - 18007253
Alignment:
| Q |
19 |
caaaggagctatacaaaatgcagttggattttctccattcattgaatgtaatgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtg |
118 |
Q |
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| T |
18007065 |
caaaggagctatacaaaatgcaattgggtatactccatacattgaatgcaatgttgattcatccaaaaacagccaactttatcaagtttacttgtgtgtg |
18007164 |
T |
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| Q |
119 |
gacacttctggatcaaacttcattgactgtcctgtgttcccccatggcaa---atgtggatctgagattgagttcccaactttttaagt |
204 |
Q |
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| T |
18007165 |
gacacttctggatcagacttcattgactgccctgtgttcccaaaaggcaaagcatgtggatctaagattgagttcccatctttttaagt |
18007253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 18029704 - 18029769
Alignment:
| Q |
86 |
aacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcattgactgtcct |
151 |
Q |
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| T |
18029704 |
aacagccaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtgtcct |
18029769 |
T |
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