View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_19 (Length: 228)
Name: NF5202_low_19
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 34466746 - 34466924
Alignment:
| Q |
50 |
atacttcattatttatatctacaaaacaagagtactcctcattattatcatttcctactttctcttttctcatgctgtaactttttaatgcaatttgtag |
149 |
Q |
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| T |
34466746 |
atacttcattatttatatcttccaaaaaagagtactcttcattattatcatttcctactttctctttactcatgctgtaacttttaaatgcaacgtgtag |
34466845 |
T |
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| Q |
150 |
ataagcaacaactcagcgacgacttgaggtacttcaagtcaaggttaaaacataattattatttttatgattttttatt |
228 |
Q |
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| T |
34466846 |
ataagcaacaactcagcgacgacttgaggtccttcaagtcaaggttaaaacatcattattatttttatgattttttatt |
34466924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 34463016 - 34463217
Alignment:
| Q |
6 |
atgcacaaggtgttaagcataagggagtctctattactccctccatacttcat---tatttatatctacaaaacaagagtactcctcattattatcattt |
102 |
Q |
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| T |
34463016 |
atgcacaaggtgttaagcataagggagtgtctattactccctccatacttcatcattatttatatctaccaaacaagagtactcttcattattatcattt |
34463115 |
T |
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| Q |
103 |
cctactttctcttttctcatgctgtaactttttaatgcaatttg----tagataagcaacaact--cagcgacgacttgaggtacttcaagtcaaggtta |
196 |
Q |
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| T |
34463116 |
cctactttctctttactcatgctgtaactttttaatgcaacgtgtagatagataagcaacaactcacagcgacgacttgaggtccttcaagtcaaggtta |
34463215 |
T |
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| Q |
197 |
aa |
198 |
Q |
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|| |
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| T |
34463216 |
aa |
34463217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 2978592 - 2978742
Alignment:
| Q |
54 |
ttcattatttatatctacaaaacaagagtactcctcattattatcatttcctactttctcttttctcatgctgtaactttttaatgcaatttgtagataa |
153 |
Q |
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| T |
2978592 |
ttcattatttatatctaccaaacaatagtacttttcattattattatttcctactctttctttactcatgctgtaactttttaatgcaatgtgtagatat |
2978691 |
T |
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| Q |
154 |
gcaacaact--cagcgacgacttgaggtacttcaagtcaaggttaaaacat |
202 |
Q |
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| T |
2978692 |
gcaacaactcacagcgacgacttgagatctttcaagtcaaggttaaaacat |
2978742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 2713280 - 2713182
Alignment:
| Q |
54 |
ttcattatttatatctacaaaacaagagtactcctcattattatcatttcctactttctcttttctcatgctgtaactttttaatgcaatttgtagata |
152 |
Q |
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| T |
2713280 |
ttcattatttatatctaccaaacaagagtagttttcattattatcgtttcctacttttcctttactcatgctgtaactttttaatgcaatgtgtagata |
2713182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 2712338 - 2712255
Alignment:
| Q |
145 |
tgtagataagcaacaactca--gcgacgacttgaggtacttcaagtcaaggttaaaacataattattatttttatgatttttta |
226 |
Q |
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| T |
2712338 |
tgtagatatgcaacaactcacagcgacgacttgagatctttcaagtcaaggttaaaacatcattactatttatatgattgttta |
2712255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 2987977 - 2988034
Alignment:
| Q |
54 |
ttcattatttatatctacaaaacaagagtactcctcattattatcatttcctactttc |
111 |
Q |
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| T |
2987977 |
ttcattatttatacctatcagacaagagtacttttcattattatcacttcctactttc |
2988034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 18354386 - 18354443
Alignment:
| Q |
54 |
ttcattatttatatctacaaaacaagagtactcctcattattatcatttcctactttc |
111 |
Q |
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| T |
18354386 |
ttcattatttatatctatcagacaagggtacttttcattattatcacttcctactttc |
18354443 |
T |
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