View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5202_low_3 (Length: 389)

Name: NF5202_low_3
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5202_low_3
NF5202_low_3
[»] chr8 (10 HSPs)
chr8 (19-385)||(10565130-10565493)
chr8 (210-377)||(44042514-44042676)
chr8 (201-321)||(12787816-12787932)
chr8 (202-350)||(20142432-20142576)
chr8 (203-339)||(4507917-4508049)
chr8 (250-321)||(40464430-40464501)
chr8 (261-346)||(6904192-6904277)
chr8 (278-353)||(41646590-41646665)
chr8 (255-321)||(3100168-3100234)
chr8 (245-291)||(24457835-24457881)
[»] chr5 (10 HSPs)
chr5 (246-376)||(11010253-11010383)
chr5 (246-339)||(40944271-40944364)
chr5 (202-376)||(248428-248599)
chr5 (202-318)||(14116478-14116590)
chr5 (201-346)||(42877212-42877353)
chr5 (202-245)||(30327584-30327627)
chr5 (252-321)||(15206517-15206585)
chr5 (250-305)||(43390370-43390425)
chr5 (261-321)||(20721277-20721337)
chr5 (259-315)||(42308060-42308116)
[»] chr3 (4 HSPs)
chr3 (248-346)||(29212711-29212809)
chr3 (250-321)||(36494188-36494260)
chr3 (203-244)||(11465720-11465761)
chr3 (250-375)||(21813124-21813249)
[»] chr6 (4 HSPs)
chr6 (202-377)||(10570908-10571079)
chr6 (250-346)||(29988326-29988420)
chr6 (261-311)||(2350296-2350346)
chr6 (271-308)||(1252754-1252791)
[»] chr1 (12 HSPs)
chr1 (246-340)||(46895941-46896035)
chr1 (245-292)||(9500923-9500970)
chr1 (203-321)||(44584072-44584185)
chr1 (250-377)||(44920231-44920358)
chr1 (202-376)||(14758528-14758698)
chr1 (250-321)||(18032202-18032273)
chr1 (250-346)||(18038906-18039002)
chr1 (202-346)||(19547046-19547186)
chr1 (257-308)||(26765974-26766025)
chr1 (206-321)||(26533738-26533849)
chr1 (202-234)||(38293977-38294009)
chr1 (202-238)||(45925461-45925497)
[»] scaffold0172 (1 HSPs)
scaffold0172 (250-375)||(13478-13603)
[»] chr7 (7 HSPs)
chr7 (202-350)||(44319848-44319992)
chr7 (250-339)||(3298231-3298320)
chr7 (257-305)||(4507909-4507957)
chr7 (250-321)||(5495992-5496063)
chr7 (250-292)||(24557747-24557789)
chr7 (270-315)||(27156877-27156922)
chr7 (204-290)||(43211011-43211093)
[»] chr2 (6 HSPs)
chr2 (250-346)||(11580418-11580514)
chr2 (250-308)||(11252723-11252781)
chr2 (250-376)||(32770737-32770863)
chr2 (202-317)||(27921859-27921971)
chr2 (252-315)||(36260442-36260505)
chr2 (250-346)||(33962940-33963036)
[»] scaffold0009 (1 HSPs)
scaffold0009 (257-319)||(25582-25644)
[»] chr4 (9 HSPs)
chr4 (201-311)||(43809118-43809223)
chr4 (206-311)||(49011915-49012016)
chr4 (250-339)||(7388788-7388877)
chr4 (261-321)||(40781432-40781492)
chr4 (250-318)||(46506338-46506408)
chr4 (250-376)||(38949026-38949152)
chr4 (207-297)||(38682631-38682717)
chr4 (201-242)||(49360012-49360053)
chr4 (202-238)||(14452233-14452269)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 10565130 - 10565493
Alignment:
Q  19 actgatgaatccatggtccacacattagacacacaactttgcaaatggtccaatgagaccctcatgatcatgaagacatgaaccaaaaggagctatggtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  10565130 actgatgaatccatggtccacacattagacacacaactttgcaaatggtcctatgagaccctaatgatcatgaagacatgaaccaaaaggagctatggtc 10565229  T
Q  119 agccttccctataatgtcatgcattggagaatttactccctcaacgagaagttctttaacttctcaagtaattattttgacca-ggtcttgctaacgagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||  | ||| ||| ||||||||    
T  10565230 agccttccctataatgtcatgcattggagaatttactccctcgacaagaagttctttaacttgtcaagtaattattttgattagggtgttgttaacgagt 10565329  T
Q  218 gtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttcc 317  Q
    ||||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10565330 gtcctaagaacactctttaagaat----tctaaattaagaaactattcattgaaaaagtctaatactttaatttttgatgtattgaatgcacaaatttcc 10565425  T
Q  318 ataagaatatacgatctaaagtcattaaataatatccttaagacactagttaacatttctattttgat 385  Q
    |||| ||| ||| |||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||    
T  10565426 ataaaaatttactatctaaagtctttaaataatactcttaagacactggttaacatttctattttgat 10565493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 377
Target Start/End: Original strand, 44042514 - 44042676
Alignment:
Q  210 taacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcac 309  Q
    ||||||||| |||||| |||||||||||| |||    |  ||||||||||||||| |||||||||||  |||||||||||||   ||| |||||||||||    
T  44042514 taacgagtgccctaaggacactctttaaggatt----cataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattgaatgcac 44042609  T
Q  310 aaatttccataagaatatacgatctaaagtcattaaataatatccttaagacactagttaacatttct 377  Q
    ||||||| |||| ||  ||| || |||| || ||||| ||||||||||| ||||| ||||||||||||    
T  44042610 aaatttctataaaaacttactatttaaaatctttaaaaaatatccttaa-acacttgttaacatttct 44042676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 12787816 - 12787932
Alignment:
Q  201 aggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtat 300  Q
    |||||||| ||||||||||| |||||| |||||||||||||    |||||||||| ||| |||||||||||||||| |||| |||||||||   ||  ||    
T  12787816 aggtcttgttaacgagtgtcttaagaatactctttaagaat----tctaaattaaaaaattatttattgaaaaagtataatgcttcaatttccaattcat 12787911  T
Q  301 tgaatgcacaaatttccataa 321  Q
    | ||||||||||||| |||||    
T  12787912 taaatgcacaaattttcataa 12787932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 20142576 - 20142432
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    ||||||| |||||||||||||||| ||||||||||||     ||| | |||||||||| ||||| || ||||||| ||| |||| |||||| |||| |||    
T  20142576 ggtcttgttaacgagtgtcctaaggacactctttaag----gtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcatt 20142481  T
Q  302 gaatgcacaaatttccataagaatatacgatctaaagtcattaaataat 350  Q
     ||||||||| || |||||| ||| ||  || ||||||| |||||||||    
T  20142480 aaatgcacaatttcccataaaaatttattatttaaagtccttaaataat 20142432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 339
Target Start/End: Complemental strand, 4508049 - 4507917
Alignment:
Q  203 gtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattg 302  Q
    |||||||||||||||||||||||  ||||||||||| ||  |     |||||||||||||||||||||||||   | ||| |||||||| ||||| |||     
T  4508049 gtcttgctaacgagtgtcctaagggcactctttaaggatagtc----aattaagaaactatttattgaaaaaacatcatatttcaatttctgatgcatta 4507954  T
Q  303 aatgcacaaatttccataagaatatacgatctaaagt 339  Q
    |||||  || ||||||||| ||  ||| |||||||||    
T  4507953 aatgcgtaagtttccataaaaacttaccatctaaagt 4507917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 40464501 - 40464430
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||| |||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||| || ||||||    
T  40464501 aattaaaaaactattcattgaaaatgtttaatatttcaattttcgatgttttgaatgcacaagttaccataa 40464430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 6904192 - 6904277
Alignment:
Q  261 tatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    |||| ||||||||||| |||| |||||||||  |||| |||||| |||||| ||||||||| ||  ||| |||||||||| |||||    
T  6904192 tattcattgaaaaagtttaatgcttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagtctttaaa 6904277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 41646590 - 41646665
Alignment:
Q  278 taatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataatatc 353  Q
    ||||||||||||||||  || ||||||||||||| ||| ||||| ||  ||| |||||||||| ||||| ||||||    
T  41646590 taatacttcaatttttattgaattgaatgcacaagttttcataaaaacttactatctaaagtccttaaagaatatc 41646665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 3100234 - 3100168
Alignment:
Q  255 agaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    ||||||||||||   |||| ||| | ||||||||||||||||| ||||||| || ||||||||||||    
T  3100234 agaaactatttaccaaaaatgtcaagtacttcaatttttgatgcattgaattcataaatttccataa 3100168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 24457835 - 24457881
Alignment:
Q  245 atctaaattaagaaactatttattgaaaaagtctaatacttcaattt 291  Q
    ||||||||||| |||||||| ||||||||||||||||  ||||||||    
T  24457835 atctaaattaaaaaactattcattgaaaaagtctaatgtttcaattt 24457881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 11010253 - 11010383
Alignment:
Q  246 tctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaa 345  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| || |||| |||| ||||| ||||    
T  11010253 tctaaattaagaaactattcattgaaaaagtctaatacttcaatttctgatgcattgaatacacaactttccataaaaacatactatctgaagtccttaa 11010352  T
Q  346 ataatatccttaagacactagttaacatttc 376  Q
    | |||  ||||| | |||| |||| ||||||    
T  11010353 aaaatgcccttaggccactcgttagcatttc 11010383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 40944364 - 40944271
Alignment:
Q  246 tctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagt 339  Q
    |||||||||||||| |||| ||||||||||| |||| |||||||||| |||| |||||||| |||||||||||||| ||| ||| |||||||||    
T  40944364 tctaaattaagaaattattcattgaaaaagtataatgcttcaattttcgatgcattgaatgtacaaatttccataaaaatttactatctaaagt 40944271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 248599 - 248428
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaa-gtctaatacttcaatttttgatgtat 300  Q
    ||||||| ||||||||||| ||||  |||||||||||  ||    || |||||||||| ||||| || ||||| || ||| ||||||||||  |||||||    
T  248599 ggtcttgttaacgagtgtcttaagggcactctttaaggttt----ctcaattaagaaattatttctttaaaaaagtttaacacttcaatttccgatgtat 248504  T
Q  301 tgaatgcacaaatttccataagaatatacgatctaaagtcattaaataatatccttaagacactagttaacatttc 376  Q
    ||||||||||| ||||||||| ||| ||| || | ||||| ||||| | |  ||||||| ||||||||||||||||    
T  248503 tgaatgcacaattttccataaaaatttactatttcaagtccttaaagagtgcccttaaggcactagttaacatttc 248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 318
Target Start/End: Original strand, 14116478 - 14116590
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    |||||||||||||| |||||||||   |||||||||| |||||     ||||||||||||||||||| |||||||||||| ||  |||||| |||  |||    
T  14116478 ggtcttgctaacgaatgtcctaaggttactctttaaggattttc----aattaagaaactatttattaaaaaagtctaatgctctaattttcgataaatt 14116573  T
Q  302 gaatgcacaaatttcca 318  Q
     ||||||||||||||||    
T  14116574 aaatgcacaaatttcca 14116590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 346
Target Start/End: Original strand, 42877212 - 42877353
Alignment:
Q  201 aggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtat 300  Q
    ||||||||||||||||||| ||||| ||||||||||| | ||   ||| |||| ||||| |||| ||  ||||||| ||| | |||||||||  ||||||    
T  42877212 aggtcttgctaacgagtgttctaaggacactctttaa-agtt---tctcaattgagaaattattcatgaaaaaagtttaaaatttcaattttcaatgtat 42877307  T
Q  301 tgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    ||||| ||||| ||||||||| ||| ||| || ||||||| |||||    
T  42877308 tgaatacacaattttccataaaaatttactatttaaagtctttaaa 42877353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 30327627 - 30327584
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaatttta 245  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  30327627 ggtcttgctaacgagtgtccttaggacactctttaagaatttta 30327584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 15206585 - 15206517
Alignment:
Q  252 ttaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||||||| || ||| |||||||| |||||||||||||| |||  ||||||||||||||||| |||||    
T  15206585 ttaagaaacttttcatt-aaaaagtccaatacttcaattttcgattcattgaatgcacaaattttcataa 15206517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 43390425 - 43390370
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaat 305  Q
    ||||||||||||||| |||  ||||||||||||||| ||||||  |||||||||||    
T  43390425 aattaagaaactattcattagaaaagtctaatactttaattttcaatgtattgaat 43390370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 20721337 - 20721277
Alignment:
Q  261 tatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||||| |||||||  || | |||||||||  |||||||||||||||| ||||||||||    
T  20721337 tatttatttaaaaagttaaacatttcaattttcaatgtattgaatgcacatatttccataa 20721277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 42308116 - 42308060
Alignment:
Q  259 actatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaattt 315  Q
    |||||| |||||||| || |||||||| ||||| |||||  ||||||||||||||||    
T  42308116 actattcattgaaaatgtataatactttaatttctgatgcgttgaatgcacaaattt 42308060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 29212711 - 29212809
Alignment:
Q  248 taaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||| ||| ||  |||||||||| |||||    
T  29212711 taaattaagaaactattcattgaaaaagtctaatgcttcaatttatgatgtattgaatgcacaagtttctataaaaatttaatatctaaagtctttaaa 29212809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 36494188 - 36494260
Alignment:
Q  250 aattaagaaactatttattgaaaaag-tctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    ||||||||||||||| |||||||||  ||||||||||||||||   ||||||||||||||||| |||||||||    
T  36494188 aattaagaaactattcattgaaaaaaatctaatacttcaatttccaatgtattgaatgcacaagtttccataa 36494260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 11465761 - 11465720
Alignment:
Q  203 gtcttgctaacgagtgtcctaagaacactctttaagaatttt 244  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttt 11465720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 375
Target Start/End: Complemental strand, 21813249 - 21813124
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataa 349  Q
    |||||||||| |||| ||||||||||| ||| |||| || ||  |||| |||||||||| || ||||||||| ||| ||| || |||| || ||||| |     
T  21813249 aattaagaaattattcattgaaaaagtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatttaaaatccttaaagag 21813150  T
Q  350 tatccttaagacactagttaacattt 375  Q
    |  ||||| ||||||  |||||||||    
T  21813149 tgcccttaggacactcattaacattt 21813124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 10571079 - 10570908
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    |||||| ||||||||| || |||| |||||||||||| |||    || ||||||||||||||| |||||||| ||  ||||||||||||||||||| |||    
T  10571079 ggtcttactaacgagtttcataaggacactctttaaggatt----cttaattaagaaactattcattgaaaatgttcaatacttcaatttttgatgcatt 10570984  T
Q  302 gaatgcacaaatttccataagaatatacgatctaaagtcattaaataatatccttaagacactagttaacatttct 377  Q
    ||||| ||||||||| |||| ||| ||| |  ||||||| ||||| | | |||||| |||| | |||| |||||||    
T  10570983 gaatgaacaaatttctataaaaatttactaaataaagtctttaaagagtgtccttatgacattcgttagcatttct 10570908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 29988420 - 29988326
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    |||||||||| ||||  || ||||||| ||||  |||||||||||||||||||||||  ||| ||||||||| ||| ||| || ||||||| |||||    
T  29988420 aattaagaaattattctttaaaaaagtataat--ttcaatttttgatgtattgaatgttcaattttccataaaaatttactatttaaagtccttaaa 29988326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 2350296 - 2350346
Alignment:
Q  261 tatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaa 311  Q
    |||||||||||||  |||||||| |||||||| ||||||||||||| ||||    
T  2350296 tatttattgaaaatatctaatacgtcaattttcgatgtattgaatgtacaa 2350346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 1252754 - 1252791
Alignment:
Q  271 aaaagtctaatacttcaatttttgatgtattgaatgca 308  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  1252754 aaaagtctaatacttcaatttatgatgcattgaatgca 1252791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 340
Target Start/End: Original strand, 46895941 - 46896035
Alignment:
Q  246 tctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtc 340  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||  |||| |||||||||| ||||||| |||| ||  ||| ||||||||||    
T  46895941 tctaaattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactatctaaagtc 46896035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 9500970 - 9500923
Alignment:
Q  245 atctaaattaagaaactatttattgaaaaagtctaatacttcaatttt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9500970 atctaaattaagaaactatttattgaaaaagtctaatacttcaatttt 9500923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 44584185 - 44584072
Alignment:
Q  203 gtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattg 302  Q
    |||||||||||||||| | |||  |||||||||||| |    ||||||||||||||||||||| |||||||||||||||  |||||||||  |||||||     
T  44584185 gtcttgctaacgagtg-cataatgacactctttaagga----atctaaattaagaaactatttgttgaaaaagtctaatgtttcaattttcaatgtatta 44584091  T
Q  303 aatgcacaaatttccataa 321  Q
    ||||||||| ||| |||||    
T  44584090 aatgcacaagttttcataa 44584072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 44920231 - 44920358
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataa 349  Q
    |||||||||| |||| ||| ||||||| ||| |||||||||| ||||| ||||||||||||| ||||||||| ||| ||| || | ||||| ||||| |     
T  44920231 aattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcattgaatgcacaattttccataaaaatttactatttcaagtccttaaaaag 44920330  T
Q  350 tatccttaagacactagttaacatttct 377  Q
    |  ||||| | |||| ||||||||||||    
T  44920331 tgcccttagggcactcgttaacatttct 44920358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 14758528 - 14758698
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    ||||||| ||||||||||||||||  ||||||||||  | |||  |  |||||||||| ||||  || ||||||| ||| | ||||||||| |||| |||    
T  14758528 ggtcttgttaacgagtgtcctaagggcactctttaa--agttttcc--aattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcatt 14758623  T
Q  302 gaatgcacaaatttccataagaatatacgatctaaagtcattaaataatatccttaagacactagttaacatttc 376  Q
    |||||||||| ||| ||||| ||| ||| || ||||||| ||||| | | ||||||   |||| |||||||||||    
T  14758624 gaatgcacaatttttcataaaaatttactatttaaagtccttaaagagtgtccttagagcactcgttaacatttc 14758698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 18032202 - 18032273
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||||||| |||||||||||||||| |||| |||||||||  |||| ||| |||||| || |||||||||    
T  18032202 aattaagaaattatttattgaaaaagtttaatgcttcaatttccgatgcattaaatgcataagtttccataa 18032273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 18038906 - 18039002
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    ||||||||||| ||  ||||||||| |||||| |||||||||  |||| ||||||| ||||||||| ||||| ||  ||  |||||||||| |||||    
T  18038906 aattaagaaacaatgcattgaaaaaatctaatgcttcaatttccgatgcattgaatacacaaattttcataaaaaattattatctaaagtctttaaa 18039002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 346
Target Start/End: Complemental strand, 19547186 - 19547046
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    ||||||||||||||||| ||||||  || |||||||| |||    |  || ||||||| |||| |||||||| ||| ||||||||||||   |||| |||    
T  19547186 ggtcttgctaacgagtgccctaagggcattctttaaggatt----cccaagtaagaaattattcattgaaaatgtccaatacttcaattcccgatgcatt 19547091  T
Q  302 gaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    |||||||||| |||| |||| ||  ||| || ||||||| |||||    
T  19547090 gaatgcacaagtttctataaaaacttactatataaagtccttaaa 19547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 26765974 - 26766025
Alignment:
Q  257 aaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgca 308  Q
    |||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||    
T  26765974 aaactattcattgaaaaagtttaatatttcaatttctgatggattgaatgca 26766025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 26533849 - 26533738
Alignment:
Q  206 ttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaat 305  Q
    ||||||||||||||| ||| |||||| |||||| |||    || |||||||||| |||  |||||||||||||||   ||||||||  | ||| || |||    
T  26533849 ttgctaacgagtgtcataataacactttttaaggatt----ctcaattaagaaattatcaattgaaaaagtctaacgtttcaatttccgctgttttaaat 26533754  T
Q  306 gcacaaatttccataa 321  Q
    |||||| |||||||||    
T  26533753 gcacaagtttccataa 26533738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 38293977 - 38294009
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctt 234  Q
    ||||||| |||||||||||||||||||||||||    
T  38293977 ggtcttgataacgagtgtcctaagaacactctt 38294009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 45925461 - 45925497
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaag 238  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  45925461 ggtcttgttaacgagtgtcctaaggacactctttaag 45925497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 375
Target Start/End: Original strand, 13478 - 13603
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataa 349  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||  |||||||||||| ||||||||| ||  ||| |||| ||||| ||||| |     
T  13478 aattaagaaactattcattgaaaaagtctaatacttcaatttccgatgctttgaatgcacaagtttccataaaaacctactatctcaagtctttaaagag 13577  T
Q  350 tatccttaagacactagttaacattt 375  Q
    |  ||||||| |||| |||| |||||    
T  13578 tgcccttaaggcactcgttagcattt 13603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 44319992 - 44319848
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtatt 301  Q
    ||||||| |||||||||||||||| ||||||||||||     ||| | |||||||||| ||||| || ||||||| ||| |||| |||||| |||| |||    
T  44319992 ggtcttgttaacgagtgtcctaaggacactctttaag----gtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcatt 44319897  T
Q  302 gaatgcacaaatttccataagaatatacgatctaaagtcattaaataat 350  Q
     ||||||||| || |||||| ||| ||  || ||||||| |||||||||    
T  44319896 aaatgcacaatttcccataaaaatttattatttaaagtccttaaataat 44319848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 3298231 - 3298320
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagt 339  Q
    ||||||||||||||| ||||||||||  | ||| |||||||| ||||| |||||||||  || ||||||||| ||| ||  |||||||||    
T  3298231 aattaagaaactattcattgaaaaagcttcatatttcaatttctgatgcattgaatgcttaagtttccataaaaatttaacatctaaagt 3298320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 4507957 - 4507909
Alignment:
Q  257 aaactatttattgaaaaagtctaatacttcaatttttgatgtattgaat 305  Q
    |||||||||| || |||||| |||||||||||||||||||| |||||||    
T  4507957 aaactatttactgtaaaagtttaatacttcaatttttgatgcattgaat 4507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 5496063 - 5495992
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||||||| ||||  ||||||| || ||| |||| |||||| |||| ||||||||||||| |||||||||    
T  5496063 aattaagaaattattccttgaaaatgtttaacactttaattttcgatgcattgaatgcacaactttccataa 5495992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 24557747 - 24557789
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttt 292  Q
    |||||| ||| |||||||| |||||||||||||||||||||||    
T  24557747 aattaaaaaattatttattaaaaaagtctaatacttcaatttt 24557789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 27156877 - 27156922
Alignment:
Q  270 aaaaagtctaatacttcaatttttgatgtattgaatgcacaaattt 315  Q
    ||||||||||||  |||||||||||||||||  |||||||||||||    
T  27156877 aaaaagtctaatgattcaatttttgatgtatcaaatgcacaaattt 27156922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 43211093 - 43211011
Alignment:
Q  204 tcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatt 290  Q
    ||||| ||||||||||||||||  |||||||||||| ||||     |||||| |||||||||||  ||||||| |||||||| ||||    
T  43211093 tcttgttaacgagtgtcctaagggcactctttaagatttttc----aattaaaaaactatttatctaaaaagtttaatactttaatt 43211011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 11580514 - 11580418
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    |||||| ||| |||| ||| || ||||||||||||||||||||||||| ||||||| ||||  ||||||||| ||  ||| |||||||||| |||||    
T  11580514 aattaaaaaattattcattaaataagtctaatacttcaatttttgatggattgaatacacatgtttccataaaaacttactatctaaagtctttaaa 11580418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 11252781 - 11252723
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgca 308  Q
    |||||||||||| || |||||||||||||| |||||||||||| |||  ||||||||||    
T  11252781 aattaagaaacttttaattgaaaaagtctactacttcaattttcgatacattgaatgca 11252723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 32770863 - 32770737
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataa 349  Q
    |||||||||| ||||||||||||||   ||||||||||||||   ||| |||||  ||| |||||||||||| | | ||| |||||||||| ||||| ||    
T  32770863 aattaagaaattatttattgaaaaaacttaatacttcaatttcgaatgcattgaccgcataaatttccataaaattttactatctaaagtccttaaagaa 32770764  T
Q  350 tatccttaagacactagttaacatttc 376  Q
    | | |||||  ||||  ||||||||||    
T  32770763 tgttcttaacgcactcattaacatttc 32770737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 27921859 - 27921971
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaa-gtctaatacttcaatttttgatgtat 300  Q
    |||||||||||| ||| | || || |||||||||||| |||    ||||||||||||| |||||||| |||||  ||||||| |||||||||  ||| ||    
T  27921859 ggtcttgctaacaagtatactcaggacactctttaagtatt----ctaaattaagaaattatttattaaaaaacctctaatatttcaattttaaatgcat 27921954  T
Q  301 tgaatgcacaaatttcc 317  Q
    |||||| | ||||||||    
T  27921955 tgaatgtataaatttcc 27921971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 36260442 - 36260505
Alignment:
Q  252 ttaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaattt 315  Q
    |||||||  |||| |||||||||||||||| ||||||||| ||||| ||| ||| |||||||||    
T  36260442 ttaagaagttattaattgaaaaagtctaatgcttcaatttctgatgcattaaatacacaaattt 36260505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 33963036 - 33962940
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaa 346  Q
    |||||||||| ||||  || ||||||| ||| |||||||||||  ||| ||||||||||||| ||| ||||| ||| ||  || ||||||| |||||    
T  33963036 aattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtccttaaa 33962940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 25644 - 25582
Alignment:
Q  257 aaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccat 319  Q
    |||||||||||||||| ||||||||| ||||||||| |||| | |||||| ||||||||||||    
T  25644 aaactatttattgaaagagtctaatatttcaattttcgatgcagtgaatgtacaaatttccat 25582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 43809118 - 43809223
Alignment:
Q  201 aggtcttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtat 300  Q
    |||| |||||||||||||||||||| |||||||||||||||    |||||||||||||| |||  |||| |||| | |||  |||| |||||||||  ||    
T  43809118 aggttttgctaacgagtgtcctaaggacactctttaagaat----tctaaattaagaaattatgcattg-aaaattttaaagcttcgatttttgatacat 43809212  T
Q  301 tgaatgcacaa 311  Q
    |||||||||||    
T  43809213 tgaatgcacaa 43809223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 49012016 - 49011915
Alignment:
Q  206 ttgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaat 305  Q
    ||||||||||||| ||||||  ||||||||||| |||||     ||| ||||| ||||| ||| ||||||| ||||||||||||||| |||| ||| |||    
T  49012016 ttgctaacgagtgacctaagtgcactctttaaggattttt----aatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaat 49011921  T
Q  306 gcacaa 311  Q
    ||||||    
T  49011920 gcacaa 49011915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 7388788 - 7388877
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagt 339  Q
    |||||||||| |||  ||||||||||||||||  | ||||||  |||| ||| ||||||||| ||||||||| ||| ||| |||||||||    
T  7388788 aattaagaaaatatccattgaaaaagtctaatgttccaatttccgatgcattaaatgcacaagtttccataaaaatttactatctaaagt 7388877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 40781492 - 40781432
Alignment:
Q  261 tatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataa 321  Q
    |||||||||||||||| |||| ||| ||||| ||||| |||||||||| | ||||||||||    
T  40781492 tatttattgaaaaagtttaatgctttaatttctgatgcattgaatgcatagatttccataa 40781432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 46506338 - 46506408
Alignment:
Q  250 aattaagaaactatttattg--aaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttcca 318  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||  |||| ||| |||| | |||||||||    
T  46506338 aattaagaaactatttattgaaaaaaaatctaatacttcaatttccgatgcattaaatggataaatttcca 46506408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 38949152 - 38949026
Alignment:
Q  250 aattaagaaactatttattgaaaaagtctaatacttcaatttttgatgtattgaatgcacaaatttccataagaatatacgatctaaagtcattaaataa 349  Q
    |||||| ||| ||||| || ||||| | ||| ||||||||||  |||| ||||||||||||| ||| ||||| ||| ||| || | ||||| ||||| |     
T  38949152 aattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatttcaagtccttaaagag 38949053  T
Q  350 tatccttaagacactagttaacatttc 376  Q
    |  |||||| ||||| |||||||||||    
T  38949052 tgcccttaaaacactcgttaacatttc 38949026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 38682631 - 38682717
Alignment:
Q  207 tgctaacgagtgtcctaagaacactctttaagaattttatctaaattaagaaactatttattgaaaaagtctaatacttcaatttttgatg 297  Q
    |||||||||||||| |||| | | ||||||||||||||     |||||||||| |||| ||| |||| || |||||||||||||| |||||    
T  38682631 tgctaacgagtgtcttaaggatattctttaagaattttt----aattaagaaaatattcattaaaaatgtgtaatacttcaatttctgatg 38682717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 49360012 - 49360053
Alignment:
Q  201 aggtcttgctaacgagtgtcctaagaacactctttaagaatt 242  Q
    |||||||| ||||||||| |||||||||||| ||||||||||    
T  49360012 aggtcttgttaacgagtgccctaagaacactttttaagaatt 49360053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 14452269 - 14452233
Alignment:
Q  202 ggtcttgctaacgagtgtcctaagaacactctttaag 238  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  14452269 ggtcttgctaacgagtgtcttaaggacactctttaag 14452233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University