View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5202_low_4 (Length: 357)
Name: NF5202_low_4
Description: NF5202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5202_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 34275972 - 34275637
Alignment:
| Q |
1 |
aatcatgcgaaaagagcatatnnnnnnnttgtcgtcactaatgagtaagagataaattacacacaaaccagtaacataatgcagttaaatgaaacatttt |
100 |
Q |
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| T |
34275972 |
aatcatgcgaaaagagcatataaaaaaattgtcgtcactaatgagtaagagataaattacacacaaaccagtaacataatgcagttaaatg--------- |
34275882 |
T |
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| Q |
101 |
tcctcttcaacataatttctaacctgaattgtcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagtagggacaagcattggt |
200 |
Q |
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| T |
34275881 |
------tcaacataatttctaacctgaattgtcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagtagggacaagcattggt |
34275788 |
T |
|
| Q |
201 |
aaacaataaggaaatgatatgcaaataagctgctataaagataaatgaatgcnnnnnnnnggtttttaccaagatatgagaaaagaggatggtgttttgt |
300 |
Q |
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| T |
34275787 |
aaacaataaggaaatgatatgcaaataagctgctataaagataaatgaatgc-aaaaaaaggtttttaccaagatatgagaaaagaggatggtgttttgt |
34275689 |
T |
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| Q |
301 |
atatgttgctacatcagttgtgtcctcgattttctttcttcttcttctcact |
352 |
Q |
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| T |
34275688 |
atatgttgctacatcagttgtgtcctcgattttctttcttcttcttctcact |
34275637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 34283116 - 34283050
Alignment:
| Q |
119 |
ctaacctgaattgtcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagta |
185 |
Q |
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|||||| | ||||||| | || |||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
34283116 |
ctaacccggattgtcaaaatcatcatccaaagagccatcagcatcagacttcttattctctacagta |
34283050 |
T |
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