View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5203_high_1 (Length: 615)
Name: NF5203_high_1
Description: NF5203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5203_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 342 - 607
Target Start/End: Original strand, 683258 - 683523
Alignment:
| Q |
342 |
aaaactctcgagaagcgtgttaactaagtttctatttctatataagatatatctcattttcaaatcaacattatcatcaatttatatttctattttcctt |
441 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
683258 |
aaaactctcaagaatcgtgttaactaagtttctatttctatataagatatatctcattttcaaatcaacattatcatcattttttatttctattttcctt |
683357 |
T |
|
| Q |
442 |
ctggtttctttatttgctttgtttcaacaagaaatggcattgatcgttaagttacttgtgttgttgttcgtctttctgtttttacagagtttgaagcatg |
541 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
683358 |
ctggtttctttattttctttgtttcaacaagaaatggcattgatcgttaagttacttgtgttgttgttcgtttttctgtttttacagagtttgaagcatg |
683457 |
T |
|
| Q |
542 |
gaaaggggaatgattaatcacaaccctaagaaacgaaaactggtgctaaacgatgatgatgatgat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
683458 |
gaaaggggaatgattaatcacaaccctaagaaacgaaaactggtgctaaacgatgatgatgatgat |
683523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 682914 - 683179
Alignment:
| Q |
20 |
gattactcactttcatcttaactaaccagagttaacttaacacccaacccaacccaacccaaccctttttgtcttattctctctctttcacattccttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
682914 |
gattactcactttcatcttaactaaccagagttaacttaacacccagcccaacccaacccaaccctttttgtattattctctctctttcatattccttgc |
683013 |
T |
|
| Q |
120 |
agtagaagggtcactcactcacacnnnnnnnatttatttcaactcttcttctcattttaccactcgctagctcaatatatctccaaaaacccattcaaaa |
219 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
683014 |
agtagaatggtcactcactcacactttttttatttatttcaactcttcttctcattgtaccactcgctagctcaatatatctccaaaaacccattcaaaa |
683113 |
T |
|
| Q |
220 |
ccctttctca-----cttctttcctcgcataagcacttttcataatcacttcttactacaaacaaa |
280 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
683114 |
ccctttctcacttctcttctttcctcgcataagcacttttcataatcacttcttactacaaacaaa |
683179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University