View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5203_high_2 (Length: 343)
Name: NF5203_high_2
Description: NF5203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5203_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 41040472 - 41040735
Alignment:
| Q |
13 |
gacgtaaaatatgttccccaaaatataactcttgagtaagggccccaaggtcttccaagactcactgtaccatttccaacaacgtaccctcctctaaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41040472 |
gacgtaaaatatgttccccaaaatataactcttgagtaagggccccaaggtcttccaagactcactgtaccatttccaacaacgtaccctcctctaaaaa |
41040571 |
T |
|
| Q |
113 |
cgaaaccatttggatcatttggtgattccctacgttgtgatgttacaaaacctgaaggtttagattctgcttgagtggcattcattacacaattctacaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41040572 |
cgaaaccatttggatcatttggtgattccctacgttgtgatgttacaaaacctgaaggtttagattctgcttgagtggcattcattacacaattctacaa |
41040671 |
T |
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| Q |
213 |
caagtgaaaatccatagaaaaataaatacttatttatttcaccttaatatacaaataaaataga |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41040672 |
caagtgaaaatccatagaaaaataaatacttatttatttcaccttaatatacaaataaaataga |
41040735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 23035139 - 23035189
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcatt |
327 |
Q |
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| T |
23035139 |
cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcatt |
23035189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 33246518 - 33246569
Alignment:
| Q |
276 |
acagggacggatccagaaattttaatatgtggggtcaatatcgtttatcatt |
327 |
Q |
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| T |
33246518 |
acagggacggatccataaattttaatatatgaggtcaatatcgtttatcatt |
33246569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 38305445 - 38305556
Alignment:
| Q |
22 |
tatgttccccaaaatataactcttgagtaagggccccaaggtcttccaagactcactgtaccatttccaacaacgtaccctcctctaaaaacgaaaccat |
121 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| | ||||| ||| ||||| | ||| |||| ||| | |||||||||||||| |||||| |
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| T |
38305445 |
tatgtttcccaaaatataactcttgaataagggccccatgcccttcctagattcactttcccaattccgtcaatgcgtcctcctctaaaaacaaaaccac |
38305544 |
T |
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| Q |
122 |
ttggatcatttg |
133 |
Q |
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|||| ||||||| |
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| T |
38305545 |
ttggttcatttg |
38305556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 23278916 - 23278871
Alignment:
| Q |
281 |
gacggatccagaaattttaatatgtggggtcaatatcgtttatcat |
326 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
23278916 |
gacggatccaaaaattctaatatgtggggtcaatatcgtttatcat |
23278871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 12252617 - 12252568
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcat |
326 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||| || ||||||||| |
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|
| T |
12252617 |
caggaacggatccagaaatttcaataagtggggtcaaaattgtttatcat |
12252568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 18547880 - 18547929
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcat |
326 |
Q |
| |
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||||||||||||||||||||| | | |||||||||| |||||||||||| |
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| T |
18547880 |
cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcat |
18547929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 7985562 - 7985598
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7985562 |
cagggacggatccagaaattttaatatgtggggtcaa |
7985598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 10733956 - 10733906
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcatt |
327 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
10733956 |
cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcatt |
10733906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 106557 - 106509
Alignment:
| Q |
276 |
acagggacggatccagaaattttaatatgtggggtcaatatcgtttatc |
324 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| ||||||||| ||||||| |
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| T |
106557 |
acagtgacggatccagaaatttcaataagtgtggtcaatattgtttatc |
106509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 13316601 - 13316558
Alignment:
| Q |
281 |
gacggatccagaaattttaatatgtggggtcaatatcgtttatc |
324 |
Q |
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||||||||||||||||| |||| ||||||||||||| ||||||| |
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| T |
13316601 |
gacggatccagaaatttcaataagtggggtcaatattgtttatc |
13316558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 6015884 - 6015836
Alignment:
| Q |
278 |
agggacggatccagaaattttaatatgtggggtcaatatcgtttatcat |
326 |
Q |
| |
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||||| |||||||||||||| |||| |||||||||| || ||||||||| |
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| T |
6015884 |
agggatggatccagaaatttcaataagtggggtcaaaattgtttatcat |
6015836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 39708660 - 39708623
Alignment:
| Q |
277 |
cagggacggatccagaaattttaatatgtggggtcaat |
314 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||| |
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| T |
39708660 |
cagggacggatccagaaattttaataagcggggtcaat |
39708623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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