View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5203_low_4 (Length: 306)
Name: NF5203_low_4
Description: NF5203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5203_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 17987741 - 17987864
Alignment:
| Q |
19 |
tcttcggcatagaagtgtttggccaaacggatttccaatattcttcttcagattgtgaagcatcaatttccacaagagttaactacaccaaaatttcaaa |
118 |
Q |
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| T |
17987741 |
tcttcggcatagaagtgtttggccaaacggatttccaatattcttcttcagattgtgaagcatcaatttccacaagagttaactacaccaaaatttcaaa |
17987840 |
T |
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| Q |
119 |
ttaaaagataaagttattcagatt |
142 |
Q |
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| T |
17987841 |
ttaaaagaaaaagttattcagatt |
17987864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 17987935 - 17988055
Alignment:
| Q |
172 |
atttcatgatgtatataatttccaaggctagaaagagtcgacctgagccaaatcagattcagcttggatcgactcgataaaaattgaataagtcgaaact |
271 |
Q |
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| T |
17987935 |
atttcatgatgtatataatttccaaggctagaaagagtcgagccgagccaaatcagattcagcttggatcaactcgataaaaattgaataagtcgaaact |
17988034 |
T |
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| Q |
272 |
cgattcgactttgttatgatt |
292 |
Q |
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| T |
17988035 |
cgactcgactttgttatgatt |
17988055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 17106035 - 17105978
Alignment:
| Q |
24 |
ggcatagaagtgtttggccaaacggatttccaatattcttcttcagattgtgaagcat |
81 |
Q |
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||||||| |||||||||||||| || ||||||||| ||||| | ||||||||||||| |
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| T |
17106035 |
ggcataggagtgtttggccaaatggttttccaataatcttcccccgattgtgaagcat |
17105978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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