View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204-Insertion-1 (Length: 819)
Name: NF5204-Insertion-1
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204-Insertion-1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 211 - 819
Target Start/End: Original strand, 52807994 - 52808604
Alignment:
| Q |
211 |
ataataataatgtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggtttatggatgaaacctggcaattatggtat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52807994 |
ataataataatgtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggtctatggatgaaacctggcaattatggtat |
52808093 |
T |
|
| Q |
311 |
tttgctgtggtgcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctatcggttagttaagaaactaaactaccagtt |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808094 |
tttgttgtggtgcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctatcggttagttaagaaactaaactaccagtt |
52808193 |
T |
|
| Q |
411 |
acaaacaaagtttaggttacagcctatgggacaaatctgaaattggttgaacttaatttagaaaaactaaatctatttagctcagaatcttgttttccaa |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808194 |
acaaacaaagtttaagttacagcctatgggacaaatctgaaattggttgaacttaatttagaaaaactaaatctatttagctcagaatcttgttttccaa |
52808293 |
T |
|
| Q |
511 |
gttgtgattatgtagtgtcattttattgtcttgacatttgttctcctacataatatcacttgacctcatattcacacaaattgaccttatagtatgggga |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52808294 |
gttgtgattatgtagtgtcattttattgtcttgacatttgttctcctacataatatcacttgacctcatattcacacaaattgaccttatagtacgggga |
52808393 |
T |
|
| Q |
611 |
cttaattagcttaatcatcctatatataattattttataatgcaattgatttacatatactattttaagtctttgcattaacgcatcgcttttgaacttg |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808394 |
cttaattagcttaatcatcctatatataattattttataatgcaattgatttacatatactattttaagtctttgcattaacgcatcgcttttgaacttg |
52808493 |
T |
|
| Q |
711 |
tattttcatcatataaattcattaggtttgaaaaattatagtggattgtcacaattgccttgtgggataataagatatgtgaaaatt--agtcatttagt |
808 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| |
|
|
| T |
52808494 |
tattttcatcatataaattcatttggtttaaaaaattatagttcattgtcacaattgccttgtgggataataagacatatgaaaattagagtcattcagt |
52808593 |
T |
|
| Q |
809 |
attttccgata |
819 |
Q |
| |
|
||||||||||| |
|
|
| T |
52808594 |
attttccgata |
52808604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 52807751 - 52807872
Alignment:
| Q |
8 |
ctttcaacttttcacaccctgcaacatcctctacttcatacctcctacgttttgcaccataatttatcttagtagattctgaactttcatagcttccatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52807751 |
ctttcaacttttcacaccctgcaacatcctctacttcatacctcctacgtttcacaccataatttatcttagtagattctgaactttcatagcttccatt |
52807850 |
T |
|
| Q |
108 |
tatcctccaatttgaaagcatc |
129 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
52807851 |
tatcctccaatttgaaagcatc |
52807872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University