View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204-Insertion-3 (Length: 746)
Name: NF5204-Insertion-3
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 23545897 - 23546255
Alignment:
| Q |
12 |
caccaccacttcgtcccccacctgccccctccgctccattcctctctttaccgccttctgcaacggccgtaaagcaggtttcgcagcccgtcgccgagcc |
111 |
Q |
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| T |
23545897 |
caccaccacttcgtcccccacctgccccctccgctccattcctctctttaccgccttctgcaacggccgtaaagcaggtttcgcagcccgtcgccgagcc |
23545996 |
T |
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| Q |
112 |
ggagacagtgtccgcaacatactacaaaccatgcagtgtgtcaccgtcggtgcaggtgttataccttcaggttttgggtcagattctgaagagcttatgt |
211 |
Q |
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| T |
23545997 |
ggagacagtgtccgcaacatactacaaaccatgcagtgtgtcaccgtcggtgcaggtgttataccttcaggttttgggtcagattctgaagagcttatgt |
23546096 |
T |
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| Q |
212 |
atatgcgtgcaaatttcgaacatgttgtgggaaatgctgattctgaatcgtttcatcttataaaccctgatgaatccactggtcaagaactcagcgnnnn |
311 |
Q |
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| T |
23546097 |
atatgcgtgcaaatttcgaacatgttgtgggaaatgctgattctgaatcgtttcatcttataaaccctgatgaatccactggtcaagaactcagcgtttt |
23546196 |
T |
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| Q |
312 |
nnngctacgagctcgcctcggaaacaatcgttaagcaaattcgtagcaatcttgcaaag |
370 |
Q |
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| T |
23546197 |
tttgctacgatctcgcctcggaaacaatcgttaagcaaattcgtagcaatcttgcaaag |
23546255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 527 - 676
Target Start/End: Original strand, 23546415 - 23546564
Alignment:
| Q |
527 |
tggtgttgttgccacgtaatgatattgatatctgtaaagttgattagtttatctaagactaatctcatcactaatattgtattattctgaatttttgtgt |
626 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23546415 |
tggtgttgttgccacgtaatgatattgatatctgtaaagttgattagtttatctaagactaatctcatcactaatattgtattgttctgaatttttgtgt |
23546514 |
T |
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| Q |
627 |
ataatattgtaactggattaaagtaaccagagtatggtccaggaatcttg |
676 |
Q |
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| T |
23546515 |
ataatattgtaactggattaaagtaaccagagtatggtccaggaatcttg |
23546564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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