View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204-Insertion-4 (Length: 587)
Name: NF5204-Insertion-4
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204-Insertion-4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Original strand, 3592335 - 3592911
Alignment:
| Q |
8 |
gaggagtcaactattaacaacagtgcaatgccaagcactagtgggagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592335 |
gaggagtcaactattaacaacagtgcaatgccaagcactagtggtagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggata |
3592434 |
T |
|
| Q |
108 |
tgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggacgattctgatatcaaaccttnnnnnnnn-cgaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
3592435 |
tgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttaaaaaaaaacgaa |
3592534 |
T |
|
| Q |
207 |
ccggacagttcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaagacggttgaatcatgatctagaagtctcacctgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3592535 |
ccggacagttcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaacacggttgaatcatgatctagaagtctcacctgt |
3592634 |
T |
|
| Q |
307 |
tcgatgtccagttcaggttttaaaccattgctttgatataaaaatatnnnnnnnntgatttgttaacacatggtagtttagtgtctaatgtccataggtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3592635 |
tcgatgtccagttcaggttttaaaccattgctttgatataaaaaaa----aaaaatgatttgttaacacatggtagtttagtttctaatgtccataggtt |
3592730 |
T |
|
| Q |
407 |
agttatttacttggggtgttgtgtttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttggagctg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592731 |
agttatttacttggggtgttgtgtttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttggagctg |
3592830 |
T |
|
| Q |
507 |
acttattttagtttcagcttcagattcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacctatt |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3592831 |
acttattttagtttcagcttcagattcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacttatt |
3592911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 35722336 - 35722446
Alignment:
| Q |
87 |
caacaagtagtggaatggatatgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttcc---ttgggacgattctga |
183 |
Q |
| |
|
|||||||| |||| ||||| | ||||| ||||||| |||||| || |||||||| ||||| |||||||||||||| ||| |||||| |||||||| |
|
|
| T |
35722336 |
caacaagtggtggcatggaaagttcaaagtattggaattgggaagacattgattcattggtttcaactgatctaaagaatccttattgggatgattctga |
35722435 |
T |
|
| Q |
184 |
tatcaaacctt |
194 |
Q |
| |
|
||||||||||| |
|
|
| T |
35722436 |
tatcaaacctt |
35722446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University