View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204-Insertion-6 (Length: 507)
Name: NF5204-Insertion-6
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204-Insertion-6 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 33412410 - 33411911
Alignment:
| Q |
8 |
ttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaatcatcaaaactcattaactatcaacgtaacttcattaacca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
33412410 |
ttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaagcatcaaaactcattaactatcaatgtaacttcattaacca |
33412311 |
T |
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| Q |
108 |
caaacttggacacatttttcagacgttcaaatctacaaccacgtgaaccccttaaaaaactatagtgaaagttgtcaaatcttagttgttcaaataacac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412310 |
caaacttggacacatttttcagacgttcaaatctacaaccacgtgaaccccttaaaaaactatagtgaaagttgtcaaatcttagttgttcaaataacac |
33412211 |
T |
|
| Q |
208 |
gactctgttacttttgtgatacaatttcatatattaatttattatttaggttcctagacaaggcaagtgtcaaaacaggctcaactagtccatggatgtt |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412210 |
gactctgttacttttgtgatgcaatttcatatattaatttattatttaggttcctagacaaggcaagtgtcaaaacaggctcaactagtccatggatgtt |
33412111 |
T |
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| Q |
308 |
atgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412110 |
atgcacagttacacatgtagaagagacaaaacaaatgctaaggatgattccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaac |
33412011 |
T |
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| Q |
408 |
accctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtctttgcttg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33412010 |
accctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtccttgcttg |
33411911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 313 - 490
Target Start/End: Original strand, 15729630 - 15729807
Alignment:
| Q |
313 |
cagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccct |
412 |
Q |
| |
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|||||||||||||||| ||||| ||||||||| |||| ||||| |||||| ||| | ||||||| |||| ||||||||||| |||||| |||| || | |
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| T |
15729630 |
cagttacacatgtagaggagaccaaacaaatgataagaatgatcccaatcatggctactacattaattcctagtacaatgattgctcaaataaatacatt |
15729729 |
T |
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| Q |
413 |
ttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
490 |
Q |
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| T |
15729730 |
gtttgtgaaacaaggaacaacacttgatagaggcattgggagtttcaaaattccaccagcaagtttaggtacatttgt |
15729807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 488
Target Start/End: Original strand, 15766204 - 15766392
Alignment:
| Q |
300 |
tggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctc |
399 |
Q |
| |
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||||||||||||||||| ||||| || ||||| || |||||||| || || | | || || | |||||| |||||| |||||||| ||||||| |||| |
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| T |
15766204 |
tggatgttatgcacagtaacacaagtggaagaaaccaaacaaatccttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctc |
15766303 |
T |
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| Q |
400 |
aagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcattt |
488 |
Q |
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| T |
15766304 |
aaataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatattccaccatcaagtttagctgcattt |
15766392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 315 - 490
Target Start/End: Original strand, 15737235 - 15737410
Alignment:
| Q |
315 |
gttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacacccttt |
414 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||| ||||| ||||| || | | | ||||| |||| ||||||||| | |||||| |||| || || | |
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| T |
15737235 |
gttacacacgtagaggagaccaaacaaatgctaagaatgatcccaattttagctacaacattaattcctagtacaatggttgctcaaataaatacactct |
15737334 |
T |
|
| Q |
415 |
ttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
490 |
Q |
| |
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|||| || ||||||||||||||||| ||| ||||||| || ||| ||||||||||||||||||||| | ||||||| |
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| T |
15737335 |
ttgtgaagcaaggaacaacacttgatagagacattgggagtttccaaattccaccagcaagtttaggtacatttgt |
15737410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 486
Target Start/End: Original strand, 15755334 - 15755521
Alignment:
| Q |
299 |
atggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggct |
398 |
Q |
| |
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|||||||||||||||| | ||||| ||||| || || |||||||| || || | ||||| || | |||||| |||||| |||||||| ||||||| ||| |
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| T |
15755334 |
atggatgttatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgccacatttattccaagtgcaatgattgct |
15755433 |
T |
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| Q |
399 |
caagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcat |
486 |
Q |
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||| |||| |||||||| ||||||||||||| || ||| ||||| |||||| | ||| ||| |||| |||||||||||| |||||| |
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| T |
15755434 |
caaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcat |
15755521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 479
Target Start/End: Original strand, 15779337 - 15779498
Alignment:
| Q |
318 |
acacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttg |
417 |
Q |
| |
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||||| ||||| ||||| |||||||| ||||| | || || || | ||||||||||||| |||| ||| ||||||| ||||| |||| ||| | |||| |
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| T |
15779337 |
acacaagtagaggagaccaaacaaatcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaataccttgtttg |
15779436 |
T |
|
| Q |
418 |
taaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagttta |
479 |
Q |
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|||| |||||| | ||||| |||||| |||||| | |||| | ||||| ||| |||||||| |
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| T |
15779437 |
taaagcaaggatctacactcgacagagccattggcaacttcgatattcctccatcaagttta |
15779498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 36292590 - 36292683
Alignment:
| Q |
17 |
ttcaaataggtggttgattatgtttaatagatggttaatgtatataacaatcatcaaaactcattaactatcaacgtaacttcattaaccacaaa |
111 |
Q |
| |
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||||||||||| ||| |||| ||| | ||||||||||||| ||||| | | ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
36292590 |
ttcaaataggtagttaattacgttcagtagatggttaatggatatactagtg-tcaaaactcattaaccatcgacgtaacttcattaaccacaaa |
36292683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 6798203 - 6798258
Alignment:
| Q |
7 |
attaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatata |
62 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
6798203 |
attaacacagttgaaataggtggttaattatgtttggtagatgattaatgtatata |
6798258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28089118 - 28089176
Alignment:
| Q |
8 |
ttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaa |
66 |
Q |
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||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||||||| |
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|
| T |
28089118 |
ttaacgcagttcaaatacatggttaattatgtttagtagatggttaatggatataacaa |
28089176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 12908386 - 12908474
Alignment:
| Q |
14 |
cagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaatcatc-aaaactcattaactatcaacgtaacttcat |
101 |
Q |
| |
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||||||||||| |||||| | || ||| ||||||||||||||| || ||||| | || ||||||||||||| | |||||||||||||| |
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| T |
12908386 |
cagttcaaatatgtggttaagtacgttcaatagatggttaatggatgtaacagttgtcaaaaactcattaaccaccaacgtaacttcat |
12908474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 5008524 - 5008573
Alignment:
| Q |
69 |
atcaaaactcattaactatcaacgtaacttcattaaccacaaacttggac |
118 |
Q |
| |
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||||||||||||| || |||||||||| ||||||||||| ||| |||||| |
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| T |
5008524 |
atcaaaactcattgacaatcaacgtaatttcattaaccaaaaatttggac |
5008573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 28610088 - 28610040
Alignment:
| Q |
14 |
cagttcaaataggtggttgattatgtttaatagatggttaatgtatata |
62 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||| || |||| ||||| |
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|
| T |
28610088 |
cagttcaaataggtggttaattatgtttagtagatagtcaatggatata |
28610040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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