View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204-Insertion-8 (Length: 309)
Name: NF5204-Insertion-8
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 41574074 - 41574332
Alignment:
| Q |
8 |
ggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctgctgctgcatgcaagtatagatagatgatacatttcaatcttt |
107 |
Q |
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| T |
41574074 |
ggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctgctgctgcatgcaagtatagatagatgatacatttca------ |
41574167 |
T |
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| Q |
108 |
agtcttatttcattgttcaaaagcactaatttgatttgattttgcccgtataattttatagtacatactttatttggtaattgtaccaaaaactacatat |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41574168 |
------------ttgttcaaaagcactaatttgatttgattt-gcccgtataattttatagtacatactttatttggtaattgtaccaaaaactacatat |
41574254 |
T |
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| Q |
208 |
atagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataagttgtaaacggtgtttcata |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41574255 |
atagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataagttgtaaacgttgtttcata |
41574332 |
T |
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