View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5204_high_15 (Length: 287)

Name: NF5204_high_15
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5204_high_15
NF5204_high_15
[»] chr7 (9 HSPs)
chr7 (14-199)||(10472099-10472284)
chr7 (126-203)||(10065499-10065576)
chr7 (150-209)||(16984114-16984173)
chr7 (155-246)||(42082767-42082858)
chr7 (131-214)||(42940756-42940839)
chr7 (131-213)||(5038250-5038332)
chr7 (196-265)||(5038346-5038415)
chr7 (125-214)||(24972994-24973084)
chr7 (155-213)||(41639754-41639812)
[»] chr4 (5 HSPs)
chr4 (152-214)||(19401768-19401830)
chr4 (155-214)||(47533802-47533861)
chr4 (150-216)||(40197891-40197957)
chr4 (155-214)||(29010086-29010145)
chr4 (152-212)||(30027518-30027578)
[»] chr8 (6 HSPs)
chr8 (59-122)||(4958283-4958346)
chr8 (149-210)||(37970829-37970891)
chr8 (152-214)||(37973393-37973455)
chr8 (161-208)||(9261236-9261283)
chr8 (152-214)||(37165147-37165209)
chr8 (150-214)||(34646268-34646332)
[»] chr2 (5 HSPs)
chr2 (126-214)||(12892793-12892881)
chr2 (131-214)||(38283869-38283953)
chr2 (152-214)||(41505762-41505824)
chr2 (171-208)||(32619321-32619358)
chr2 (165-213)||(3257061-3257108)
[»] chr6 (4 HSPs)
chr6 (152-208)||(4332959-4333015)
chr6 (150-211)||(32549427-32549488)
chr6 (160-214)||(33013054-33013108)
chr6 (149-210)||(7385309-7385370)
[»] chr3 (3 HSPs)
chr3 (150-214)||(1699955-1700019)
chr3 (157-213)||(38215491-38215547)
chr3 (150-214)||(40362053-40362117)
[»] chr1 (6 HSPs)
chr1 (123-214)||(28650949-28651040)
chr1 (156-214)||(28190588-28190646)
chr1 (125-214)||(45962275-45962364)
chr1 (158-214)||(28190516-28190572)
chr1 (152-194)||(16313603-16313645)
chr1 (197-269)||(45962189-45962261)
[»] scaffold0067 (1 HSPs)
scaffold0067 (150-199)||(15365-15414)
[»] chr5 (1 HSPs)
chr5 (122-213)||(30393233-30393324)
[»] scaffold1107 (1 HSPs)
scaffold1107 (157-194)||(1308-1345)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 10472284 - 10472099
Alignment:
Q  14 aaatatacaaatccaataaatataagaacttgattcatttttacaacaattaacattattttgtgcatgtgttctggtccactctcattagtgatatatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10472284 aaatatacaaatccaataaatataagaacttgattcatttttacaacaattaacattattttgtgcatgtgttctggtccactctcattggtgatatatg 10472185  T
Q  114 gatatatctttttgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatc 199  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||    
T  10472184 gatatatctttttgaacattgttgtttacaccttgaacaaggttaagaaacatcatcaaatgacaaatttaacctcaatttccatc 10472099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 10065576 - 10065499
Alignment:
Q  126 tgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggca 203  Q
    |||||||||||||||| ||||||||||| | | ||||| || || |||||||||||||||| ||||||||||||||||    
T  10065576 tgaacattgttgtttacaccttgaacaatgttgagaaatactataaaatgataaatttaacttcaattttcatcggca 10065499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 16984114 - 16984173
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaac 209  Q
    |||| |||||||| |||||| |||||| |||||||||||||||||||||| |||||||||    
T  16984114 acaaagctaagaagcaccatgaaatgacaaatttaacctcaattttcatcagcagttaac 16984173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 42082767 - 42082858
Alignment:
Q  155 gctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccgatacggttattttagcattttcgtggtgtttc 246  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||| ||||| |||||| ||  | |||| || | | ||||||||||||||    
T  42082767 gctaagaaacaccatgaaatgacaaatttaacctcaaatttcatcgacagtttactaccaatgggattatattggtaatttcgtggtgtttc 42082858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 42940839 - 42940756
Alignment:
Q  131 attgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||| |||||| || ||| |||||| ||||||||||||| |||| | ||||||||| ||||||| ||||| |||||||||||||    
T  42940839 attgctgtttacactttgcacaaggataagaaacaccatgaaataacaaatttaacttcaatttccatcgacagttaactaccg 42940756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 5038250 - 5038332
Alignment:
Q  131 attgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactacc 213  Q
    ||||||||||| || ||| |||| | ||||||||||||| |||||| ||||||||| ||||||  ||||| ||||||||||||    
T  5038250 attgttgtttacactttgcacaaagttaagaaacaccatgaaatgaaaaatttaacttcaattaccatcgacagttaactacc 5038332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 5038346 - 5038415
Alignment:
Q  196 catcggcagttaactaccgatacggttattttagcattttcgtggtgtttcttggactcctttgacgtgg 265  Q
    ||||| ||||||||| |||||   |||||||||| |||||||||||||||| | ||||||||||| ||||    
T  5038346 catcgtcagttaactgccgatgaagttattttagtattttcgtggtgtttcctagactcctttgaagtgg 5038415  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 24973084 - 24972994
Alignment:
Q  125 ttgaacattgttgtttaaaccttgaacaaggctaag-aaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    ||||| ||||||||||| || ||| || | |||||| ||||||||| |||||| |||||||||  |||||| |||||  ||||||||||||    
T  24973084 ttgaaaattgttgtttacactttgcaccaagctaaggaaacaccatgaaatgacaaatttaactccaatttccatcgatagttaactaccg 24972994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 41639812 - 41639754
Alignment:
Q  155 gctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactacc 213  Q
    ||||| ||| ||||| |||||| |||||||||| |||||| ||||| ||||||||||||    
T  41639812 gctaaaaaagaccataaaatgacaaatttaaccccaatttccatcgacagttaactacc 41639754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 19401830 - 19401768
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  19401830 aaggctaagaaacaccataaaatgataaatttaaccccaattttcttcggcagttaactaccg 19401768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 47533861 - 47533802
Alignment:
Q  155 gctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||  |||||||||||    
T  47533861 gctaagaaacacaattaaatgataaatttaacctcaaatttcatcggtcgttaactaccg 47533802  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 40197957 - 40197891
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccgat 216  Q
    |||| |||||||||||| || ||||||||||||||||| |||  | ||||||||||||||| |||||    
T  40197957 acaatgctaagaaacactataaaatgataaatttaaccccaaaatccatcggcagttaactgccgat 40197891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 29010145 - 29010086
Alignment:
Q  155 gctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    ||||||||||||||| |||||| |||||||||||||| ||  ||||| ||| ||||||||    
T  29010145 gctaagaaacaccataaaatgacaaatttaacctcaaattctatcggaagtaaactaccg 29010086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 30027578 - 30027518
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactac 212  Q
    |||||||||||| ||||| ||||||  |||||||||||||||||  |||  ||||||||||    
T  30027578 aaggctaagaaataccataaaatgacgaatttaacctcaatttttttcgatagttaactac 30027518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 4958283 - 4958346
Alignment:
Q  59 acaattaacattattttgtgcatgtgttctggtccactctcattagtgatatatggatatatct 122  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  4958283 acaattaacattattttgtgctggtgttctggtccactctcattagtggtctatggatatatct 4958346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 37970829 - 37970891
Alignment:
Q  149 aacaaggctaagaaacaccatcaaatgataaatttaacctcaatt-ttcatcggcagttaact 210  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||  | ||||||||||||||    
T  37970829 aacaaggctaagaaacaccataaaatgataaaattaacctcatttaattatcggcagttaact 37970891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 37973393 - 37973455
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||| ||||| || || |||||||||||||||||||||||||| || |||||| |||||||    
T  37973393 aaggctcagaaatactataaaatgataaatttaacctcaattttcttcagcagttgactaccg 37973455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 9261236 - 9261283
Alignment:
Q  161 aaacaccatcaaatgataaatttaacctcaattttcatcggcagttaa 208  Q
    ||||| ||| ||||||||||||||||| |||||||| |||||||||||    
T  9261236 aaacatcattaaatgataaatttaaccccaattttcttcggcagttaa 9261283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 37165147 - 37165209
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||||||| ||| |||||| |||||||| | || ||||| ||||||||||| |||||    
T  37165147 aaggctaagaaacatcataaaatgacaaatttaatcccatttttcttcggcagttaattaccg 37165209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 34646332 - 34646268
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||| ||||| ||||||||| |||||| |||||||| | ||| || |||||| ||||||||||||    
T  34646332 acaatgctaataaacaccatgaaatgacaaatttaatcccaaattccatcggaagttaactaccg 34646268  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 12892793 - 12892881
Alignment:
Q  126 tgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||| ||||||||||| || ||| | || | |||||||||| || ||||||||||||||||| |||||||| ||| |||||||||||||    
T  12892793 tgaaaattgttgtttacactttgcagaaagttaagaaacactatgaaatgataaatttaaccccaattttcgtcgacagttaactaccg 12892881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 38283869 - 38283953
Alignment:
Q  131 attgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaa-ttttcatcggcagttaactaccg 214  Q
    ||||||||||| ||  | || |||| ||||||||||||| |||||| ||| |||||||||| ||||| |||||||||||||||||    
T  38283869 attgttgtttacactcttaaaaaggttaagaaacaccataaaatgacaaacttaacctcaatttttcttcggcagttaactaccg 38283953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 41505824 - 41505762
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||||||||||| ||||||  ||||||||| || ||||| |||||| ||||||||||    
T  41505824 aaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccg 41505762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 32619358 - 32619321
Alignment:
Q  171 aaatgataaatttaacctcaattttcatcggcagttaa 208  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  32619358 aaatgataaatttaatctcaattttcatcggcagttaa 32619321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 3257108 - 3257061
Alignment:
Q  165 accatcaaatgataaatttaacctcaattttcatcggcagttaactacc 213  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||||||||    
T  3257108 accataaaataataaatttaacctca-ttttcatcggtagttaactacc 3257061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 4332959 - 4333015
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaa 208  Q
    |||||||||||||||||| |||| | ||||||||| |||||||||||||| ||||||    
T  4332959 aaggctaagaaacaccattaaataacaaatttaacgtcaattttcatcggtagttaa 4333015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 32549427 - 32549488
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaacta 211  Q
    |||| ||||||||||||||| |||||| || ||||||| ||| ||||||||| |||||||||    
T  32549427 acaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaacta 32549488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 33013054 - 33013108
Alignment:
Q  160 gaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||| ||||||||||||||||| | |  |||||||||| ||||||||||    
T  33013054 gaaacaccataaaatgataaatttaaccccgaaattcatcggcaattaactaccg 33013108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 7385309 - 7385370
Alignment:
Q  149 aacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaact 210  Q
    ||||| |||||||||||||| |||||||||| ||||||||| | || |||||  ||||||||    
T  7385309 aacaatgctaagaaacaccagcaaatgataattttaacctcgaattacatcgatagttaact 7385370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 1699955 - 1700019
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||| ||||||||||||||| |||| | |||||||||||||| || ||||||| |||||||||||    
T  1699955 acaatgctaagaaacaccatgaaataacaaatttaacctcaaattccatcggccgttaactaccg 1700019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 38215491 - 38215547
Alignment:
Q  157 taagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactacc 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||| |||||||||||||    
T  38215491 taagaaacaccatgaaacgataaatttaacctcaatttctatcagcagttaactacc 38215547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 40362117 - 40362053
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||| ||||||||||||||| |||||| |||||||||| ||| |||||| |  ||||||||||||    
T  40362117 acaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccg 40362053  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 28650949 - 28651040
Alignment:
Q  123 ttttgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    ||||||| ||||||||||| ||    ||||| ||||||||| ||||| ||||  ||||||||||||||||||||||| ||| |||| |||||    
T  28650949 ttttgaaaattgttgtttacactacaaacaaagctaagaaagaccataaaatagtaaatttaacctcaattttcatcagcaattaattaccg 28651040  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 28190646 - 28190588
Alignment:
Q  156 ctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||| ||| |||||| || ||||||||||| ||||||||| ||||||||||||    
T  28190646 ctaagaaacaacattaaatgacaagtttaacctcaaatttcatcggtagttaactaccg 28190588  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 45962364 - 45962275
Alignment:
Q  125 ttgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    ||||| ||||||||||| || ||| |||| | ||||||||| | | ||||| |||||||||| || |||||||| |||||||||| ||||    
T  45962364 ttgaaaattgttgtttacactttgcacaaagttaagaaacatcgtgaaatggtaaatttaacttcgattttcatgggcagttaacgaccg 45962275  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 28190516 - 28190572
Alignment:
Q  158 aagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactaccg 214  Q
    |||||||||||| |||||| || ||||||||||| ||||||| | ||||||||||||    
T  28190516 aagaaacaccatgaaatgacaagtttaacctcaaatttcatcagtagttaactaccg 28190572  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 16313645 - 16313603
Alignment:
Q  152 aaggctaagaaacaccatcaaatgataaatttaacctcaattt 194  Q
    |||| ||||||||||||| |||||| |||||||||||||||||    
T  16313645 aaggttaagaaacaccatgaaatgagaaatttaacctcaattt 16313603  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 45962261 - 45962189
Alignment:
Q  197 atcggcagttaactaccgatacggttattttagcattttcgtggtgtttcttggactcctttgacgtgggaac 269  Q
    |||||||||||| || ||||  |||||||||   ||||| ||||||||||||  |||||||||| ||||||||    
T  45962261 atcggcagttaattatcgatgaggttattttgctattttggtggtgtttcttacactcctttgatgtgggaac 45962189  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 15414 - 15365
Alignment:
Q  150 acaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatc 199  Q
    |||| ||||||||||||||| |||||| |||||||||| |||||||||||    
T  15414 acaaagctaagaaacaccatgaaatgacaaatttaaccccaattttcatc 15365  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 30393324 - 30393233
Alignment:
Q  122 tttttgaacattgttgtttaaaccttgaacaaggctaagaaacaccatcaaatgataaatttaacctcaattttcatcggcagttaactacc 213  Q
    |||||||| ||||||||||| || ||| |||| | ||||||| ||||| |||||   ||||||||  |||||||||||| | ||||||||||    
T  30393324 tttttgaaaattgttgtttacactttgcacaaagttaagaaataccataaaatggcgaatttaacaccaattttcatcgacggttaactacc 30393233  T

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Target: scaffold1107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 1345 - 1308
Alignment:
Q  157 taagaaacaccatcaaatgataaatttaacctcaattt 194  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  1345 taagaaacaccatgaaatgacaaatttaacctcaattt 1308  T

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