View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204_high_16 (Length: 279)
Name: NF5204_high_16
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 39941712 - 39941959
Alignment:
| Q |
13 |
aatatcaccaacaaactaaattcctcattgtcaattccaaattctcaattgtaaattcatttgaataatttaagtgttgttcaagttttattatgccatt |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39941712 |
aatatcaccaacacactaaattcctcattgtcaattccaaattctcaattgtaaattcatttgaataatttaagtgttgttcaagttttattatgccatt |
39941811 |
T |
|
| Q |
113 |
ttaattgtttaatttcttcaattgacannnnnnnnccctcatctaacgtaaagttttaaacacaaatttacacttgcttgttgtattgctttaagtttaa |
212 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39941812 |
ttatttgtttaatttcttcaattgacattttttttccctcatctaacgtaaagttttaaacacaaatttacacttgcttgttgtattgctttaagtttaa |
39941911 |
T |
|
| Q |
213 |
acaaaatatagattccttgacactaaatggacaaaacaatgagattgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39941912 |
acaaaatatagattccttgacactaaatggacaaaacaatgagattgt |
39941959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University