View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204_high_17 (Length: 256)
Name: NF5204_high_17
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 4698689 - 4698514
Alignment:
| Q |
69 |
aatactaattcaatggcttaatttctacatatttatattctatagctgacttcaaatgtaacggttattatataaaagacgtgctta---ttaaagtact |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4698689 |
aatactaattcaatggcttaatttctacatatttatattctatagctgatgtcaaatgtaacggttattatataaaagacgtgcttaatattaaagtact |
4698590 |
T |
|
| Q |
166 |
cttgtaccaataaattaaagtactcaactgttacagcctcacacgtagataatcaatgatgatgataataataagt |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4698589 |
cttgtaccaaaaaattaaagtactcaactgttacagcctcacacgtagataatcaatgatgatgataataataagt |
4698514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 4698984 - 4698933
Alignment:
| Q |
7 |
aaaaacaagtcataccttaattcatgaataatttactaattcaatatttgta |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4698984 |
aaaaacaagtcataccttaattcatgaataatttactaattcaatatttgta |
4698933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 4713193 - 4713155
Alignment:
| Q |
13 |
aagtcataccttaattcatgaataatttactaattcaat |
51 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4713193 |
aagtcatatcttaattcatgaataatttactaattcaat |
4713155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 4713230 - 4713193
Alignment:
| Q |
13 |
aagtcataccttaattcatgaataatttactaattcaa |
50 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4713230 |
aagtcatatcttaattcatgaataatttactaattcaa |
4713193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 4724848 - 4724813
Alignment:
| Q |
16 |
tcataccttaattcatgaataatttactaattcaat |
51 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4724848 |
tcataccttaattcatgaatagtttactaattcaat |
4724813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 4744459 - 4744421
Alignment:
| Q |
13 |
aagtcataccttaattcatgaataatttactaattcaat |
51 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
4744459 |
aagtcataccttaattcataaatagtttactaattcaat |
4744421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University