View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204_high_2 (Length: 537)
Name: NF5204_high_2
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_high_2 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Complemental strand, 27207366 - 27206858
Alignment:
| Q |
7 |
tcgaagaatatcccttatgacatgaaaaaatgatgggcaatgttaacatgtgtttgtatagatcttactattactcagtttgttaaaataatttattact |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207366 |
tcgaagaatatcccttatgacatgaaaaaatgatgaccaatgttaacatgtgtttgtatagatcttactattactcagtttgttaaaataatttattact |
27207267 |
T |
|
| Q |
107 |
taagcgagcatatcttttannnnnnnnctttctgcagaatagtaactaaatcacaatgaatatttttacttacaaagtaatgagaatatttgttacatga |
206 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207266 |
taagcgagcatatctttaaaaaaaaaa--ttctgcagaatagtaactaaatcaaaatgaatatttttacttacaaagtaatgagaatatttgttacatga |
27207169 |
T |
|
| Q |
207 |
aagtaaactaattaatttatagaaagaaattcaacttgaaattaaaattttatttattatatagaatacatttgaacttctcctagcaaagatataaagt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27207168 |
aagtaaactaattaatttatagaaagaaattcaacttgaaattaaaattttattcattatatagaatacatttgaacttctcctagcaaaaatataaagt |
27207069 |
T |
|
| Q |
307 |
gtaatcagtttggaaatcatcaaagaaattctttcttaatgtttgcatcatcaattctaaactatcttgaaaggagcgggttttagagaaggatttgtaa |
406 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27207068 |
ctaatcagtttggaaatcatcaaagaaagtctttcttaatgtttgcatcatcaattctaaactatcttgaaaggagcgggttttagagaaggatttgcaa |
27206969 |
T |
|
| Q |
407 |
aatggccttcgattaaaccttgggttatttgtttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaactat |
506 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
27206968 |
aatggccttcgattaaacctttagttatttgtttatgagctgcttcagtaaagtgcggtccatcccaatttattagtttcgaaggatcagagcaaattgt |
27206869 |
T |
|
| Q |
507 |
tgtactctgcc |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
27206868 |
tgtactctgcc |
27206858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 273 - 510
Target Start/End: Complemental strand, 31253083 - 31252845
Alignment:
| Q |
273 |
tacatttgaacttctcctagcaaagatataaagtgtaatca-gtttggaaatcatcaaagaaattctttcttaatgtttgcatcatcaattctaaactat |
371 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||||||| | |||||| |||| ||||||| ||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
31253083 |
tacatttaaacttctcatagcagagatataaagtgtaatcatgattggaattcatgaaagaaagtctttcttaatatttacatcatcaattctaagctat |
31252984 |
T |
|
| Q |
372 |
cttgaaaggagcgggttttagagaaggatttgtaaaatggccttcgattaaaccttgggttatttgtttatgagctgcttcggtaaagtgcggtccatcc |
471 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||| ||||||||||||| |||| | |||||| |||| ||| ||||||||||| || ||||||||| |
|
|
| T |
31252983 |
cttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtccatcc |
31252884 |
T |
|
| Q |
472 |
taatttattagtttcgaaggatcagagcaaactattgta |
510 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
31252883 |
caatttattagttttgaaggatcagagcaaactgttgta |
31252845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 273 - 510
Target Start/End: Original strand, 13002503 - 13002741
Alignment:
| Q |
273 |
tacatttgaacttctcctagcaaagatataaagtgtaatca-gtttggaaatcatcaaagaaattctttcttaatgtttgcatcatcaattctaaactat |
371 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||||||| | ||| || |||| ||||||| ||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
13002503 |
tacatttaaacttctcatagcagagatataaagtgtaatcatgattgtaattcattaaagaaagtctttcttaatatttacatcatcaattctaagctat |
13002602 |
T |
|
| Q |
372 |
cttgaaaggagcgggttttagagaaggatttgtaaaatggccttcgattaaaccttgggttatttgtttatgagctgcttcggtaaagtgcggtccatcc |
471 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||| ||||||||||||| |||| | |||||| |||| ||| ||||||||||| || ||||||||| |
|
|
| T |
13002603 |
cttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtccatcc |
13002702 |
T |
|
| Q |
472 |
taatttattagtttcgaaggatcagagcaaactattgta |
510 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13002703 |
caatttattagttttgaaggatcagagcaaactgttgta |
13002741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 215 - 502
Target Start/End: Original strand, 31093247 - 31093533
Alignment:
| Q |
215 |
taattaatttatagaaagaaattcaacttgaaattaaaattttatttattatatagaatacatttgaacttctcctagcaaagatataaagtgtaatca- |
313 |
Q |
| |
|
||||||||||||||| || |||||| ||| |||||||| ||||||| | ||||| |||||||||| ||||| ||| | || |||||||||||||||||| |
|
|
| T |
31093247 |
taattaatttatagatagtaattcaccttaaaattaaa-ttttattcactatattgaatacatttaaactt-tcccatcagagatataaagtgtaatcat |
31093344 |
T |
|
| Q |
314 |
gtttggaaatcatcaaagaaattctttcttaatgtttgcatcatcaattctaaactatcttgaaaggagcgggttttagagaaggatttgtaaaatggcc |
413 |
Q |
| |
|
| |||||| |||||||||||| || |||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||| || |||| ||| |
|
|
| T |
31093345 |
gcttggaattcatcaaagaaagtcgttcttaatgtttacatcatcgattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagagcc |
31093444 |
T |
|
| Q |
414 |
ttcgattaaaccttgggttatttgtttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaa |
502 |
Q |
| |
|
||| | ||||| || | ||| || |||| ||| |||||||||||||| | |||||| |||||| |||||| |||||||| ||||||| |
|
|
| T |
31093445 |
ttccactaaacatttagctatatgcttataagcggcttcggtaaagtgttgaccatcccaatttaatagttttgaaggatcggagcaaa |
31093533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 16163781 - 16163536
Alignment:
| Q |
266 |
tatagaatacatttgaacttctccta-gcaaagatataaagtgtaatca-gtttggaaatcatcaaagaaattctttcttaatgtttgcatcatcaattc |
363 |
Q |
| |
|
||||||||||||| ||||||||||| | | ||||||||||| ||||| | || ||| ||||| || ||| |||||||| |||| ||||||||||||| |
|
|
| T |
16163781 |
tatagaatacattcaaacttctcctatgtagagatataaagtccaatcatgcttagaattcatcgaacaaagtctttcttgatgt--gcatcatcaattc |
16163684 |
T |
|
| Q |
364 |
taaactatcttgaaaggagcgggttttagagaaggatttgtaaaatggccttcgattaaaccttgggttatttgtttatgagctgcttcggtaaagtgcg |
463 |
Q |
| |
|
|| ||||||||||||| ||| |||||||| || ||||||| |||| ||||| |||||||||| || |||||| |||| ||||||||||| ||||| | |
|
|
| T |
16163683 |
tagactatcttgaaagcagcaggttttagggatggatttgcaaaagaaccttcaattaaacctttggctatttgcttatatgctgcttcggttaagtgag |
16163584 |
T |
|
| Q |
464 |
gtccatcctaatttattagtttcgaaggatcagagcaaactattgtac |
511 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
16163583 |
gtccatcaaaatttattagttttgaaggatcagagcaaactgttgtac |
16163536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 488
Target Start/End: Complemental strand, 27229610 - 27229554
Alignment:
| Q |
432 |
tatttgtttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcga |
488 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
27229610 |
tatttgcttatgagctgcttcggtaaagtgggatccatcctaatttattaatttcga |
27229554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 18107 - 18172
Alignment:
| Q |
439 |
ttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaact |
504 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| ||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
18107 |
ttataagctgcttcagtaaagtgtggtccgtcccaatttatacgttttgaaggatcagagcaaact |
18172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 43119 - 43184
Alignment:
| Q |
439 |
ttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaact |
504 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| ||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
43119 |
ttataagctgcttcagtaaagtgtggtccgtcccaatttatacgttttgaaggatcagagcaaact |
43184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 504
Target Start/End: Original strand, 33130095 - 33130160
Alignment:
| Q |
439 |
ttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaact |
504 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| ||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
33130095 |
ttataagctgcttcagtaaagtgaggtccgtcccaatttatacgttttgaaggatcagagcaaact |
33130160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 33120352 - 33120419
Alignment:
| Q |
439 |
ttatgagctgcttcggtaaagtgcggtccatcctaatttattagtttcgaaggatcagagcaaactat |
506 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| ||| ||||||| | || |||||||||||||||||||| |
|
|
| T |
33120352 |
ttataagctgcttcagtaaagtgaggtccgtcccaatttatacgatttgaaggatcagagcaaactat |
33120419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University