View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_high_9 (Length: 339)
Name: NF5204_high_9
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 21844524 - 21844217
Alignment:
| Q |
8 |
agattaaaggtgtgacagtaatgtcttgaggtaaggtttgtatcgttcattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttaaatttc |
107 |
Q |
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| T |
21844524 |
agattaaaggtgtgacagtagtgtcttgaggtagggtttgtatcgtccattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttcaatttc |
21844425 |
T |
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| Q |
108 |
aaccactagtattataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctaattttagctataactatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21844424 |
aaccactagtattataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctatttttagctataactatg |
21844325 |
T |
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| Q |
208 |
caaatatcacccaata-nnnnnnnnnaaggaaaattatcaccaaatatatatttcgttnnnnnnnntatcattcaatatatattgcaaaaaccaccatct |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21844324 |
caaatatcacccaatattttttttttaaggaaaattatcaccaaatatatatttcgtt--aaaaattatcattcaatatatattgcaaaaaccaccatct |
21844227 |
T |
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| Q |
307 |
ttttcctcaa |
316 |
Q |
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||| |||||| |
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| T |
21844226 |
tttccctcaa |
21844217 |
T |
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