View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5204_low_1 (Length: 630)
Name: NF5204_low_1
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 305 - 614
Target Start/End: Original strand, 14500343 - 14500654
Alignment:
| Q |
305 |
taatgctcgtggtatacatgtaacgttatgttaagttaaaa--aagtggatgttaaacaatgtataattagaaggacccatatatcgaatgttttaaagt |
402 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14500343 |
taatactcgtggtatacatgtaacattatgttaagttaaaaaaaagtggatgttaaacaacgtataattagaaggacccacatatcgaatgttttaaagt |
14500442 |
T |
|
| Q |
403 |
tgtggaataatatatcgtatccaaatcatttgtaggattactcaaaatcaagtaagatgatgaattagactttcgcacttgtatatgaatgagtcaagct |
502 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14500443 |
tgtgaaataatatatcgtatccaaatcatctgtaggattactcaaaaccaagtaagatgatgaattagactttcgcacttgtatacgaatgagtcaagct |
14500542 |
T |
|
| Q |
503 |
taaaagatagacgctcattatttggttacgtttgagcatcggcacacttatcaatgaatatgaaccacattcaacaatgtttaaattcaaaaatctgtaa |
602 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14500543 |
taaaagatggacgctcattatttggttacgcttgagcgtcggcacacttatcaatgaatatgaaccacattcaacaatgtttaaattcaaaaatctataa |
14500642 |
T |
|
| Q |
603 |
caccgtggtatc |
614 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14500643 |
caccgtggtatc |
14500654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 14500014 - 14500270
Alignment:
| Q |
12 |
acagataggaattacaattgattctgggtttccaaagttctatctttgctttcagtctctcttcctttctcatttcccaagatgttctattctgagtcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14500014 |
acagataggaattacaattgattctgggtttccaaagttctatctttgctttcagtctctcttcctttctcatttcccaagatgttctattctgagtcag |
14500113 |
T |
|
| Q |
112 |
caacacttcatagcactccattactcttattttgggcaacaataaagctatcctactttgatttctcaatgagataatttcctctatatac-ttttgtta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
14500114 |
caacacttcatagcactccattactcttattttgggcaacaataaagctatcctactttgatttctcaatgagataatttcctatatatactttttttta |
14500213 |
T |
|
| Q |
211 |
taatctttggaggatttggataagttaattacaactagaaaattaatactcatggta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14500214 |
taatctttggaggatttggataagttaattacaactagaaaattaatactcgtggta |
14500270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 14500314 - 14500357
Alignment:
| Q |
257 |
tactcatggtatacatgtaacgttcatgttaatactcgtggtat |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14500314 |
tactcgtggtatacatgtaacgttcatgttaatactcgtggtat |
14500357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University