View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_10 (Length: 336)
Name: NF5204_low_10
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8407227 - 8406972
Alignment:
| Q |
1 |
aaaagtccatagcctttgttgcaggctaattaccaagctactacgtagtttcataattcttgcatgtaacgcagccttaattgtggttttatttgtacaa |
100 |
Q |
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| T |
8407227 |
aaaagtccatagcctttgttgcatgctaattaccaagctactacttagtttcataattcttgcatgtaacgcagccttaattgtggttttatttgtacaa |
8407128 |
T |
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| Q |
101 |
cgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaatcatagtttcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407127 |
cgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaatcatagtttcctt |
8407028 |
T |
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| Q |
201 |
atttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407027 |
atttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
8406972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8432305 - 8432050
Alignment:
| Q |
1 |
aaaagtccatagcctttgttgcaggctaattaccaagctactacgtagtttcataattcttgcatgtaacgcagccttaattgtggttttatttgtacaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8432305 |
aaaagtccatagcctttgttgcatgctaattaccaagctactacttagtttcataattcttgcatgtaacgcagccttaattgtggttttatttgtacaa |
8432206 |
T |
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| Q |
101 |
cgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaatcatagtttcctt |
200 |
Q |
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| T |
8432205 |
cgttgcatgttgagaccacccaacatacacaaggcttggaattttgaacagagactatgtcaatttttaattaattcaattggtcaatcatagtttcctt |
8432106 |
T |
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| Q |
201 |
atttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
256 |
Q |
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| T |
8432105 |
atttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
8432050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 8413236 - 8413187
Alignment:
| Q |
25 |
gctaattaccaagctactacgtagtttcataattcttgcatgtaacgcag |
74 |
Q |
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| T |
8413236 |
gctaattaccaagctactacgtagtttcgtttttcttgcatgtaacgcag |
8413187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 8435334 - 8435285
Alignment:
| Q |
25 |
gctaattaccaagctactacgtagtttcataattcttgcatgtaacgcag |
74 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8435334 |
gctaattaccaagctactacgtagtttcgtttttcttgcatgtaacgcag |
8435285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 8378199 - 8378235
Alignment:
| Q |
25 |
gctaattaccaagctactacgtagtttcataattctt |
61 |
Q |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
8378199 |
gctaattaccaagctactacgtagtttcgtatttctt |
8378235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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