View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5204_low_11 (Length: 331)

Name: NF5204_low_11
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5204_low_11
NF5204_low_11
[»] chr8 (5 HSPs)
chr8 (1-272)||(12587541-12587811)
chr8 (225-272)||(27324864-27324911)
chr8 (225-272)||(26647250-26647297)
chr8 (226-268)||(34054155-34054197)
chr8 (226-263)||(29283695-29283732)
[»] chr6 (1 HSPs)
chr6 (1-272)||(6900343-6900615)
[»] chr7 (3 HSPs)
chr7 (16-271)||(22969821-22970070)
chr7 (81-272)||(22962526-22962718)
chr7 (224-275)||(21312015-21312066)
[»] chr1 (1 HSPs)
chr1 (16-271)||(21880555-21880804)
[»] chr3 (2 HSPs)
chr3 (1-268)||(49603088-49603360)
chr3 (228-274)||(36840782-36840828)
[»] chr4 (2 HSPs)
chr4 (228-272)||(41451213-41451257)
chr4 (225-271)||(53232830-53232876)
[»] chr5 (2 HSPs)
chr5 (225-272)||(3293738-3293785)
chr5 (225-272)||(10711679-10711726)
[»] scaffold0197 (1 HSPs)
scaffold0197 (224-268)||(26288-26332)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 12587541 - 12587811
Alignment:
Q  1 tgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataattgtgttggctgg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||    
T  12587541 tgtttgttcactgtgagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaattgtgttagctgg 12587640  T
Q  101 gccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587641 gccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg 12587740  T
Q  201 tatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    |||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587741 tata-aaaaaaaaaaatagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 12587811  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 27324864 - 27324911
Alignment:
Q  225 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||    
T  27324864 tttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctg 27324911  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 26647297 - 26647250
Alignment:
Q  225 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  26647297 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 26647250  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 34054197 - 34054155
Alignment:
Q  226 ttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 268  Q
    ||||||||| ||||||||||||| || ||||||||||||||||    
T  34054197 ttgtgcaggtaggagcccccacactcttgtgagtggctccgcc 34054155  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 29283695 - 29283732
Alignment:
Q  226 ttgtgcaggcaggagcccccacaatcatgtgagtggct 263  Q
    ||||||||||||||||||||||| || |||||||||||    
T  29283695 ttgtgcaggcaggagcccccacactcttgtgagtggct 29283732  T

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Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6900615 - 6900343
Alignment:
Q  1 tgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataattgtgttggctgg 100  Q
    |||||||||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||| |||||||||  ||||    
T  6900615 tgtttgttcactgtaagaaagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgttaactgg 6900516  T
Q  101 gccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg 200  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6900515 gccttgggattgggcagttgggctactgagtgggagtgtttgatattttagaaattgctagcaatagtgggtggggtgttattagcagtatatgtatatg 6900416  T
Q  201 tatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||| |          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6900415 tatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 6900343  T

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Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 22970070 - 22969821
Alignment:
Q  16 agaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataattgtgttggctgggccttgggattgggc 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||| ||||||||| ||||||||||||||||||||    
T  22970070 agaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttagctgggccttgggattgggc 22969971  T
Q  116 agttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatgtatatatnnnnnnnn 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | | |             
T  22969970 agttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtttataaaaaaa------aat 22969877  T
Q  216 ntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 271  Q
     |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22969876 ttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 22969821  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 22962718 - 22962526
Alignment:
Q  81 atcataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgct--agcagtagtgggtggggtg 178  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||  |||| ||||||||||||||    
T  22962718 atcagaattgtgttagctgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaatagtgggtggggtg 22962619  T
Q  179 ttattagcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||||||||||||  ||||||||||| |          |||| || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  22962618 ttattagcagtata--tatatgtatataaaaaaaaaaattagaaaaatttgtgcaggcaggagcccccacaatcatgtgagtggctctgcccctg 22962526  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 21312015 - 21312066
Alignment:
Q  224 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgatt 275  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||| ||||||    
T  21312015 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactgatt 21312066  T

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Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 21880555 - 21880804
Alignment:
Q  16 agaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataattgtgttggctgggccttgggattgggc 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||| ||||||||| ||||||||||||||||||||    
T  21880555 agaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttagctgggccttgggattgggc 21880654  T
Q  116 agttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatgtatatatnnnnnnnn 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | | |             
T  21880655 agttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtttataaaaaaa------aat 21880748  T
Q  216 ntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 271  Q
     |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21880749 ttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 21880804  T

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Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 49603088 - 49603360
Alignment:
Q  1 tgtttgttcactatgagaaaga----aagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataattgtgttgg 96  Q
    |||||||||||| |||||||||    |||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||| ||||||||| |    
T  49603088 tgtttgttcactgtgagaaagagagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgttag 49603187  T
Q  97 ctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgta 196  Q
     |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| ||    
T  49603188 ttgggccttgggattgggcagttaggctactgggtaggagtgtttgatattttagaaattgttagcaatagtaggtggggtgttattagcagtatatata 49603287  T
Q  197 tatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 268  Q
    ||||||||| |          |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  49603288 tatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccgcaatcatgtgagtggctccgcc 49603360  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 36840782 - 36840828
Alignment:
Q  228 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgat 274  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||    
T  36840782 gtgcaggcacgagcccccacaataatgtgagtggttccgcctctgat 36840828  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 41451213 - 41451257
Alignment:
Q  228 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  41451213 gtgcaggcaggagcccccacactgatgtgagtggctccgcccctg 41451257  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 53232830 - 53232876
Alignment:
Q  225 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 271  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||    
T  53232830 tttgtgcaggcaggagcccacacaagcttgtgtgtggctccgcccct 53232876  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 3293785 - 3293738
Alignment:
Q  225 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  3293785 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 3293738  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 10711679 - 10711726
Alignment:
Q  225 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 272  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  10711679 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 10711726  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26288 - 26332
Alignment:
Q  224 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 268  Q
    |||||||||||||||||||| ||||| | |||| |||||||||||    
T  26288 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc 26332  T

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