View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_12 (Length: 321)
Name: NF5204_low_12
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 28852277 - 28852562
Alignment:
| Q |
18 |
caactttccttgaatcgtccctaatatacagactaatactttgcaaagtgacatcaagtgaatccatgcgtgaattgaaatatgcattagttagacgcaa |
117 |
Q |
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| T |
28852277 |
caactttccttgaatcgtccctaatatacagactaatactttgcaaagtgacatcaagtgaatccatgcgtgaattgaaatatgcattagttagacgcaa |
28852376 |
T |
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| Q |
118 |
tgtgcatgcatgtaccttacnnnnnnnnnnnnnagatgttgaacttgagtactctatatctttcgaggtggaatcttgaggggctctaggagagaaagat |
217 |
Q |
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| T |
28852377 |
tgcgcatg----taccttaatttttccttttttagatgttgaacttgagtactctatatctttccaggtggaatcttgaggggctctaggagagaaagat |
28852472 |
T |
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| Q |
218 |
tattaagtaaatttgttgaaaacgaatgcgagaagatagataggctaatggaactatacatcaggtaggttgatattgtcctctttctct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28852473 |
tattaagtaaatttgttgaaaacgaatgcgagaagatagataggctaatggaactatacatcaggtaggttgatcttgtcctctttctct |
28852562 |
T |
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