View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_15 (Length: 308)
Name: NF5204_low_15
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 4698987 - 4699194
Alignment:
| Q |
6 |
taagggtatggtgtgacttacttgaaaactgcatcattgaattagtaaaatatgcacgaattgtttggttatgatatattagtgtgaaagtcactcgata |
105 |
Q |
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| T |
4698987 |
taagggtatggtgtgacttacttgaaaactgcatcattgaattagtaaaatatgcacgaattgtttggttatgatatattagtgtgaaagtcactcgata |
4699086 |
T |
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| Q |
106 |
gttgctgattacattaataatccaataactggttatttaagaatttatcattaaactacg-aaaaaatgtcattaaaataaggccttctttcctacaagt |
204 |
Q |
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| T |
4699087 |
gttgctgattacattaataatccaataactggttatttaagaatttgtcattaaactacgaaaaaaatgtcattaaaataaggccttcttttctacaagt |
4699186 |
T |
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| Q |
205 |
tggtccta |
212 |
Q |
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| T |
4699187 |
cggtccta |
4699194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 4678865 - 4678933
Alignment:
| Q |
83 |
attagtgtgaaagtcactcgatagttgctgattacattaataatccaataactggttatttaagaattt |
151 |
Q |
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| T |
4678865 |
attattgtgaaagtcactcgatagttgctgattatattaatcatccaatggtttgttgtttaagaattt |
4678933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 4713225 - 4713297
Alignment:
| Q |
19 |
tgacttacttgaaaactgcatcattgaattagtaaaatatgcacgaattgtttggttatgatatattagtgtg |
91 |
Q |
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| T |
4713225 |
tgacttacttgcaaattacatcattgaatttgtaaaatatggttgaattgtttagttatgatatattattgtg |
4713297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 4687620 - 4687673
Alignment:
| Q |
79 |
atatattagtgtgaaagtcactcgatagttgctgattacattaataatccaata |
132 |
Q |
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| T |
4687620 |
atatattattgtgaaagtcacactatagttgcagattatattaatcatccaata |
4687673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 4894875 - 4894839
Alignment:
| Q |
87 |
gtgtgaaagtcactcgatagttgctgattacattaat |
123 |
Q |
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| T |
4894875 |
gtgtgaaaatcactcgatagttgctgattatattaat |
4894839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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