View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_20 (Length: 229)
Name: NF5204_low_20
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 3592339 - 3592144
Alignment:
| Q |
19 |
tcctccattattttaaactcttcatcaccatagttatatccattagttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgat |
118 |
Q |
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| T |
3592339 |
tcctccattattttaaactcttcatcaccatagttatatccattatttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgat |
3592240 |
T |
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| Q |
119 |
gaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagaatctgtg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3592239 |
gaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagattctgtg |
3592144 |
T |
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