View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_3 (Length: 453)
Name: NF5204_low_3
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 11299619 - 11299235
Alignment:
| Q |
16 |
gttaactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatc |
115 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11299619 |
gttaactcacttgtgaatgacctacatattgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcatttctagctaattcatc |
11299520 |
T |
|
| Q |
116 |
ccatgaccaatcccagtaaccctatagaaaatgattattagataaataatcaattagagtttctattaaactatgaaattcttaaagctagaatatacaa |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11299519 |
ccatgaccaatcccagtaaccctatagaaaattattaataaatcaataatcaattagagtttctattaaactatgaaattcttaaagctaaaatatacaa |
11299420 |
T |
|
| Q |
216 |
caataaagattctctatacttggaacatcggtggacgatttgtaaaatctacaatcaagattcaaactcgattttttacatataaaattaaaatctaann |
315 |
Q |
| |
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|||||| |||||| | |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11299419 |
caataaggattctatgtactcggaacatcggtagacgatctgtaaaatctacaatcaagattcaaactcgattttttacatataaaattaaaatctaatt |
11299320 |
T |
|
| Q |
316 |
nnnnnnatcgtccaatcttgatcaaaagttcaccgatatttcaaatttaaatgtggggaatctctgatggtaaggaactcaaatt |
400 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
11299319 |
ttttttattgtccaatcttgatcaaaaattcaccgatatttcaaatttaaatgtggggaatctccaatggtaaagaactcaaatt |
11299235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 11293669 - 11293285
Alignment:
| Q |
16 |
gttaactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11293669 |
gttaactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatc |
11293570 |
T |
|
| Q |
116 |
ccatgaccaatcccagtaaccctatagaaaatgattattagataaataatcaattagagtttctattaaactatgaaattcttaaagctagaatatacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||||| || |||||||||||||||| ||||| | |
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| T |
11293569 |
ccatgaccaatcccagtaaccctatcgaaaaagattaataaatcaataatcaattagattttctattaagctgtgaaattcttaaagctgaaatat---a |
11293473 |
T |
|
| Q |
216 |
caataaagattctctatacttggaacatcggtggacgatttgtaaaatctacaatcaagattcaaactcgattttttacatataaaattaaaatctaann |
315 |
Q |
| |
|
|||| | |||| | |||||||||||||||||| |||| | |||||||||||||||||||||||||| | |||||||| |||||||||||||| ||| |
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| T |
11293472 |
caatcgaaattccgtgtacttggaacatcggtgggcgatctttaaaatctacaatcaagattcaaacttggttttttacgtataaaattaaaatgtaatt |
11293373 |
T |
|
| Q |
316 |
nnnnnnatcgtccaatcttgatcaaaagttcaccgatatttcaaatttaaatgtggggaatctctgatggtaaggaactcaaattcat |
403 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||| ||||| ||||||| |
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|
| T |
11293372 |
ttttttatcgtccaatcttaatcaaaagttcacagatatttcgaatttaaatgtgggaaatctcagatagtaagaaactcgaattcat |
11293285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 30910866 - 30910713
Alignment:
| Q |
18 |
taactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatccc |
117 |
Q |
| |
|
||||| |||||||||| ||||||| |||| |||||||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||| |||| |
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| T |
30910866 |
taacttacctgtgaatcacctacaaagtgcattttttgaccagtatggtcgtaaacatattgcactgtagcaggaagatcattattagctaattcttccc |
30910767 |
T |
|
| Q |
118 |
atgaccaatcccagtaaccctatagaaaatgattattagataaataatcaatta |
171 |
Q |
| |
|
||||||| ||||||||| ||| || || |||||| || || |||||||||||| |
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|
| T |
30910766 |
atgaccactcccagtaagcctgtaacaattgattaataaatcaataatcaatta |
30910713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 30904447 - 30904323
Alignment:
| Q |
15 |
agttaactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcat |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||| ||||| | ||| ||||| || | ||||||||||||||||| |||| ||||||| |
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| T |
30904447 |
agttaactcacctgagaatgacctacgtagtgcattttttgaccagtatggttgtacacatactggactgaagcaggaagatcataattagccaattcat |
30904348 |
T |
|
| Q |
115 |
cccatgaccaatcccagtaacccta |
139 |
Q |
| |
|
|||||||||||| ||| ||| |||| |
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| T |
30904347 |
cccatgaccaattccaataagccta |
30904323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 36663555 - 36663433
Alignment:
| Q |
19 |
aactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatccca |
118 |
Q |
| |
|
|||| ||||| ||||||| | ||||||| ||||||| || ||||| | |||||||||||| | ||||||||||||||||| |||| ||||||||||| |
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|
| T |
36663555 |
aactaacctgagaatgacttgcatagtggatttttttaccagtatggttgtaaacatattggactgaagcaggaagatcataattagccaattcatccca |
36663456 |
T |
|
| Q |
119 |
tgaccaatcccagtaaccctata |
141 |
Q |
| |
|
|||||||||||||||| |||||| |
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| T |
36663455 |
tgaccaatcccagtaagcctata |
36663433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 36713053 - 36713177
Alignment:
| Q |
17 |
ttaactcacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatcc |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||| || |||||||||| ||||| | ||| |||||||| ||||||||| ||||||| | |||||||||||| |
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|
| T |
36713053 |
ttaactcacctgagaatgaccgacataatgcattttttgaccagtatggttgtacacatattgtgctgaagcaggtagatcataaccggctaattcatcc |
36713152 |
T |
|
| Q |
117 |
catgaccaatcccagtaaccctata |
141 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
36713153 |
catgaccaatcccagtaagcctata |
36713177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 36705521 - 36705639
Alignment:
| Q |
23 |
cacctgtgaatgacctacatagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatcccatgac |
122 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||| || |||| | |||||||||||| | ||||||||| ||||||| || |||||||||||||||||| |
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|
| T |
36705521 |
cacctgagaatgacctgtatagtgaatttttttacccgtattgttgtaaacatattgaactgaagcagggagatcataacttgctaattcatcccatgac |
36705620 |
T |
|
| Q |
123 |
caatcccagtaaccctata |
141 |
Q |
| |
|
|||| ||||||| |||||| |
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|
| T |
36705621 |
caattccagtaagcctata |
36705639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 36698895 - 36699018
Alignment:
| Q |
19 |
aactcacctgtgaatgacctacatagtgtattttttg-actggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatccc |
117 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| ||||||| || | ||||| |||||||||||| | ||||||| | ||||||| |||| |||||||||| |
|
|
| T |
36698895 |
aactaacctgggaatgaccttcatagtggattttttttaccagaatgattgtaaacatattggactgaagcatggagatcataattagccaattcatccc |
36698994 |
T |
|
| Q |
118 |
atgaccaatcccagtaaccctata |
141 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
36698995 |
atgaccaatcccagtaagcctata |
36699018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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