View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_4 (Length: 447)
Name: NF5204_low_4
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_4 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 188 - 431
Target Start/End: Complemental strand, 1739398 - 1739155
Alignment:
| Q |
188 |
atgattaaaggatactagttactagttaggttaactaagcaaatcaaggataataattaaaagacacaaa-ttgtgaggcagaagggcatcccaaaatat |
286 |
Q |
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| T |
1739398 |
atgattaaaggatactagttactagtcaggt-aactaagcaaatcaaggatgataattaaaagacaaattgttgtgaggcataagggcatcccaaaacac |
1739300 |
T |
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| Q |
287 |
atgggatgccttaagtatgttcggtaagggcaggcaaatggggcgccatttacgacttattagtctaccttatcgattggcaaccatctgagtacgctca |
386 |
Q |
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| T |
1739299 |
atgggatgtcttaagtatgttcgataagtgcaggtaaatggggcgtcatttatgatttattagtctaacttatcggttggcaaccatctaagtacactca |
1739200 |
T |
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| Q |
387 |
cactcgggtggacttttgcaatacgcacatataactaaatgatga |
431 |
Q |
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| T |
1739199 |
tgctcgggtggacttttgcaatacgcacatataactaaatgatga |
1739155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 151 - 435
Target Start/End: Complemental strand, 66851 - 66565
Alignment:
| Q |
151 |
cattataacctactgctatatctattattacttac-agatgattaaaggatactagttactagttaggttaactaagcaaatcaaggataataattaaaa |
249 |
Q |
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| T |
66851 |
cattataacctactgctatatatattactacttatgaaattatcaaaggttactagttcctaatttaggtaacgaagtaaattaaggatgataattaaga |
66752 |
T |
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| Q |
250 |
gacacaaattgtgaggcagaagggcatc-ccaaaatatatgggatgccttaagtatgttcggtaagggcaggcaaatggggcgccatttacgacttatta |
348 |
Q |
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| T |
66751 |
gacacaaattatgaggcagaagggtatttccaaaacacatgggatatcttaaatatgtttggtaagggcaggtaaatggggcgccatttacgacttatta |
66652 |
T |
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| Q |
349 |
gtctaccttatcgattggcaaccatctgagtacgctcacactcgggtggacttttgcaatacgcacatataactaaatgatgagaat |
435 |
Q |
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| T |
66651 |
gtctaccttaccggttgacaaccacctaagtacattcacgtttgggtggacttttgcaatacacacatataagtaaatgatgtgaat |
66565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33776291 - 33776244
Alignment:
| Q |
1 |
ccttggattaggatgccaaaaaatgtagctcacttgtatattattaag |
48 |
Q |
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| T |
33776291 |
ccttggattaggatgccaaaaaatgtagctcacttgtatattattaag |
33776244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1570065 - 1570112
Alignment:
| Q |
1 |
ccttggattaggatgccaaaaaatgtagctcacttgtatattattaag |
48 |
Q |
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| T |
1570065 |
ccttggattaggatgccaaaaaatgtagctcacttgtatattattaag |
1570112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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