View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5204_low_8 (Length: 340)
Name: NF5204_low_8
Description: NF5204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5204_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 11689378 - 11689051
Alignment:
| Q |
1 |
tttcgtatggagttgctattattttctaccatgaagtgtaaacattatactcacccgatatcaacaacggtcgatgcaggtaacaagaagtgttgacact |
100 |
Q |
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| T |
11689378 |
tttcgtatggagttgctagtatgttttatcattaagtgtaaacattatactcactcgacatctacaatggtcgatgtaggtaacaagaagtgttgacact |
11689279 |
T |
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| Q |
101 |
gaatatggaaagctaagtccacaggaacagaagactatggacgccattgtccgggctaggtgactctgatgtagtttttgcttcagaatatatatttttt |
200 |
Q |
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| T |
11689278 |
gagtatggaaaactaagtccacaggaacagaagactatggatgccattgtccgggctaggtgactctgatgtagtttttgcttcagaatctatctttttt |
11689179 |
T |
|
| Q |
201 |
gaaatatcatatcttatatgttttccttataacagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaat |
300 |
Q |
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| T |
11689178 |
gaaacatcatatcttatatgttttatttataacagtaagcttcctctttcaattatattggttggtgttggagatggaccatgggacatgatgaaagaat |
11689079 |
T |
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| Q |
301 |
ttgacgataacattccatctcgtgcctt |
328 |
Q |
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| T |
11689078 |
ttgacgataatattccatctcgtgcctt |
11689051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 30955111 - 30955165
Alignment:
| Q |
241 |
ttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaa |
295 |
Q |
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| T |
30955111 |
ttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtgaa |
30955165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 30958940 - 30959003
Alignment:
| Q |
232 |
acagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaa |
295 |
Q |
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| T |
30958940 |
acagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
30959003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 7473963 - 7474039
Alignment:
| Q |
75 |
tgcaggtaacaagaagtgttgacactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtc |
151 |
Q |
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| T |
7473963 |
tgcaggtaacaagaagtattgacactgaacatggaaggctcagtccacaggagcagaagactgtggatgccattgtc |
7474039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 7474122 - 7474194
Alignment:
| Q |
232 |
acagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttga |
304 |
Q |
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| T |
7474122 |
acagtaaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttga |
7474194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 34392570 - 34392503
Alignment:
| Q |
249 |
tcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacattcc |
316 |
Q |
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| T |
34392570 |
tcaatcgtattagtcggagttggagatgggccatgggacatgatgaaacagtttgacgataacattcc |
34392503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 44131152 - 44131224
Alignment:
| Q |
242 |
tcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacatt |
314 |
Q |
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| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaaacactttgatgataacatt |
44131224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 37318373 - 37318303
Alignment:
| Q |
258 |
ttggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacattccatctcgtgcctt |
328 |
Q |
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| T |
37318373 |
ttggttggagttggagatggaccgtgggatatgatgagggaatttgacgataatattccagctcgagcctt |
37318303 |
T |
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