View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5205-Insertion-1 (Length: 428)
Name: NF5205-Insertion-1
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5205-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 51364738 - 51365143
Alignment:
| Q |
7 |
aaaacatttgtatcttaaccatatactta----ttcttccgtgcaatcctacaagctcccaccccaacgaacgccagtgccgctccaactgcaatattat |
102 |
Q |
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| T |
51364738 |
aaaacatttgtatcttaaccatatacttacttattcttccgtgcaatcctacaagctcccaccccaacgaacgccagtgccgctccaactgcaatattat |
51364837 |
T |
|
| Q |
103 |
tcgatactaaatcattaaacatccaaaaataaattacaaagggaacacgccacttcaatccaccttgtcattccacaaattagaaggacatgaaactaaa |
202 |
Q |
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| T |
51364838 |
-----------------aacatccaaaaataaattacaaagagaacacaccacttcaatccaccttgtcattccacaaattagaaggacatgaaactaaa |
51364920 |
T |
|
| Q |
203 |
catgcaaaatggaaaaacaagtatgaacaacggtcacacaccacttcaaggttacaagagagagaacaccatggaatatcaaaatgaaatatgcaaccaa |
302 |
Q |
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| T |
51364921 |
catgcaaaatggaaaaacaagtatgaacaacggtcacacaccacttcaagattacaagagagagaacaccatggaatatcaaaatgaaatatgcaaccaa |
51365020 |
T |
|
| Q |
303 |
ataagtagaacacatgaaccaagatatacaaaaatcaaataaagccaaaagaaactttatgaacaaccaacaagtcaaaccgaaaacggatatacctgag |
402 |
Q |
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| T |
51365021 |
ataagtagaacacatgaaccaagatatacaaaaatcaaataaagccaaaagaaactttatgaacaaccaacaagtcaaaccgaaaacggatatacctgag |
51365120 |
T |
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| Q |
403 |
acaaacataagagtttgatttac |
425 |
Q |
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| T |
51365121 |
acaaacataagagtttgatttac |
51365143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 53870251 - 53870213
Alignment:
| Q |
160 |
atccaccttgtcattccacaaattagaaggacatgaaac |
198 |
Q |
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||||||||||||| |||||||||||||||| |||||||| |
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| T |
53870251 |
atccaccttgtcactccacaaattagaagggcatgaaac |
53870213 |
T |
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