View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5205_high_3 (Length: 263)
Name: NF5205_high_3
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5205_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 46167361 - 46167099
Alignment:
| Q |
1 |
ttcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagagatatattgtgagactgtttgaaagagcttatgaaaatatgatatagc |
100 |
Q |
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| T |
46167361 |
ttcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagagatatattgtgagactgtttgaaagagcttatgaaaatatgatatagc |
46167262 |
T |
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| Q |
101 |
ttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagcacgtatatgataagcgattatgcgacgacaagcacctaattaagtt |
200 |
Q |
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| T |
46167261 |
ttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagcacgtatatgataagcgattatgcgacgacaagcgcctaattaagtt |
46167162 |
T |
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| Q |
201 |
gttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccattttcatca |
263 |
Q |
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| T |
46167161 |
gttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccattttcatca |
46167099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 46160340 - 46160237
Alignment:
| Q |
157 |
gtatatgataagcgattatgcgacgacaagcacctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccatt |
256 |
Q |
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| T |
46160340 |
gtatatgataagcgattatgctac---aagcgcctaattaagttgttcatacctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccatt |
46160244 |
T |
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| Q |
257 |
ttcatca |
263 |
Q |
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| T |
46160243 |
ttcatca |
46160237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46160845 - 46160794
Alignment:
| Q |
1 |
ttcttggacccgcctgtgttaggaaatcacattgatagtaaagttacataga |
52 |
Q |
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| T |
46160845 |
ttcttggacccgcctgtgttaggatgtcacattgacagtaaagttacataga |
46160794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 26516256 - 26516212
Alignment:
| Q |
133 |
tagaaattgcttatacagaagcacgtatatgataagcgattatgc |
177 |
Q |
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| T |
26516256 |
tagaaatagcttatacataagcacttatatgataagcgcttatgc |
26516212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 28283561 - 28283593
Alignment:
| Q |
59 |
ttgtgagactgtttgaaagagcttatgaaaata |
91 |
Q |
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| T |
28283561 |
ttgtgagactgtttgaaagaacttatgaaaata |
28283593 |
T |
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