View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5205_high_4 (Length: 249)
Name: NF5205_high_4
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5205_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7527613 - 7527853
Alignment:
| Q |
1 |
atttaaagaacaaaatgattgtctacccaaataaaagaacactaatacaatgttaaaaatcaggtttatttattttatctgcaaagtaaaagaacccacg |
100 |
Q |
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| T |
7527613 |
atttaaagaataaaatgattgtctacccaaataaaagaacactaatacaatgttaaaaatcagctttctttattttatctgcaaaataaaagaacccacg |
7527712 |
T |
|
| Q |
101 |
ttgttgtaaggaaaaaagtttaatgcatttcattagatataggttcaatgatacatgtcggtacatcaacaaaagtatagagacggattaaaaatatgat |
200 |
Q |
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| T |
7527713 |
ttgttgtaaggaaaaaagtttaatgcatttcattatatataggttcaatgatacatatcggtacatcaacaaaagtatggagatggattaaaaatatgat |
7527812 |
T |
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| Q |
201 |
ctatttaactaatgtttgaactatctcattcgttgtctctg |
241 |
Q |
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| T |
7527813 |
ctatttagctaatgtatgaattatctcattcgctgtctctg |
7527853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 21822396 - 21822327
Alignment:
| Q |
107 |
taaggaaaaaagtttaatgcatttcattagatataggttcaatgatacatgtcggtacatcaacaaaagt |
176 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| ||||| | ||||||||| | |||||| |
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| T |
21822396 |
taaggaaaaaagtttatagcatttcattagatattagttcaataatacacgacggtacatcgataaaagt |
21822327 |
T |
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