View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5205_high_5 (Length: 247)

Name: NF5205_high_5
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5205_high_5
NF5205_high_5
[»] chr1 (4 HSPs)
chr1 (15-242)||(46693262-46693488)
chr1 (22-215)||(19598013-19598207)
chr1 (150-215)||(50589796-50589861)
chr1 (45-73)||(50589938-50589966)
[»] chr7 (1 HSPs)
chr7 (15-242)||(10243599-10243825)
[»] chr8 (1 HSPs)
chr8 (15-241)||(37987303-37987525)
[»] chr5 (4 HSPs)
chr5 (15-242)||(697773-697999)
chr5 (22-196)||(27712475-27712650)
chr5 (51-159)||(22687082-22687191)
chr5 (119-195)||(8730433-8730508)
[»] chr4 (4 HSPs)
chr4 (51-215)||(28966293-28966458)
chr4 (22-89)||(8254456-8254523)
chr4 (22-89)||(8267874-8267941)
chr4 (31-79)||(46699459-46699506)
[»] chr2 (2 HSPs)
chr2 (150-207)||(27739352-27739409)
chr2 (119-195)||(25505399-25505474)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 46693488 - 46693262
Alignment:
Q  15 tttcatctcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggttattc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46693488 tttcatctcctttgggtctgtgtttaggtcgatgcctgtttcttggcgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggttattc 46693389  T
Q  115 tctatggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgt 214  Q
    | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  46693388 tatgtggttgcttctttggaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttacgcttgtgtctgctgatccatggtgt 46693289  T
Q  215 taggtttgtgtggtgggggtgatgatgt 242  Q
    | ||||||||||||||||||||||||||    
T  46693288 t-ggtttgtgtggtgggggtgatgatgt 46693262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 19598013 - 19598207
Alignment:
Q  22 tcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggt-tattctctatg 120  Q
    |||||| ||| ||||||| ||| | |||||||||||||| |||||||||||||||||| | | |||||||||| | ||||||| | || |||||| | ||    
T  19598013 tccttttggtttgtgtttgggttgctgcctgtttcttggcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctttgtg 19598112  T
Q  121 gttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgtt 215  Q
    |||| ||||| |||||||| ||| |||| |||||||||||||||| ||| || ||||| |||||||||| |||||||||||||| | ||||||||    
T  19598113 gttgattcttcagaatgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttgctcttgtgtctgttgaacagtggtgtt 19598207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 50589861 - 50589796
Alignment:
Q  150 ttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgtt 215  Q
    |||||||||||||||  |||| |||||||||||||||||| ||||||  || ||||||||||||||    
T  50589861 ttgctgctttccttgaagactatcaaccttgttgtcttgctcttgtgcttgctgatccgtggtgtt 50589796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 50589966 - 50589938
Alignment:
Q  45 gatgcctgtttcttggtgaggtggtttgg 73  Q
    |||||||||||||||||||||||||||||    
T  50589966 gatgcctgtttcttggtgaggtggtttgg 50589938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 10243599 - 10243825
Alignment:
Q  15 tttcatctcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggttattc 114  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||| ||||||   ||||||| ||||||||||||||| ||| | |||    
T  10243599 tttcatctccttttggtctgtgtttaagtcgatgcttgtttcttggcgaggtggtttagaggcgaattccttgtatcttttgttggtttgtgggattttc 10243698  T
Q  115 tctatggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgt 214  Q
    ||| ||||| ||||||  |||||||||||| |||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||  ||| |||||||||    
T  10243699 tctgtggtttcttcttcggaatgctttgggaatgcttgctgctttccgtggagaccttcaaccttgctgtcttgcgcttgtgtctactgaaccgtggtgt 10243798  T
Q  215 taggtttgtgtggtgggggtgatgatgt 242  Q
    | ||||||||||||||||||||||||||    
T  10243799 t-ggtttgtgtggtgggggtgatgatgt 10243825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 37987525 - 37987303
Alignment:
Q  15 tttcatctcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggttattc 114  Q
    ||||||||||| | | | |||||||| |||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||| ||    
T  37987525 tttcatctcctcttgttatgtgtttaagtcgatgcttgtttcttggcgaggtggtttggagtcgttatccttgtctcttttgttggtttgtgggttactc 37987426  T
Q  115 tctatggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgt 214  Q
    ||| |||||| ||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  37987425 tctgtggttg-ttc-ttggaatgctttggggatgattgctgctttccttggagactttcaaccttgttgtctt-cgcttgtgtctgctgaaccgtggtgt 37987329  T
Q  215 taggtttgtgtggtgggggtgatgatg 241  Q
    | ||||||||||||||||| |||||||    
T  37987328 t-ggtttgtgtggtgggggagatgatg 37987303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 697773 - 697999
Alignment:
Q  15 tttcatctcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggttattc 114  Q
    ||||||||||||| ||| |||||||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  697773 tttcatctccttttggtatgtgtttaggtcaatgcttgtttcttgacgaggtggtttggaggcgctgtccttgtctcttttgttggtttatgggttattc 697872  T
Q  115 tctatggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgt 214  Q
    | | ||||||||||||  ||| | | |||||| ||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| | | |||||||||    
T  697873 tttgtggttgcttcttcggaaagttatggggaggcttgctacttttcttggagactttcaaccttgctgtcttgcgcttgtgtctgctaaaccgtggtgt 697972  T
Q  215 taggtttgtgtggtgggggtgatgatgt 242  Q
    | |||| |||||||||||||||||||||    
T  697973 t-ggttagtgtggtgggggtgatgatgt 697999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 27712475 - 27712650
Alignment:
Q  22 tcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggt-tattctctatg 120  Q
    |||||| ||||||||||| ||| | || ||||||||||| |||||||||||||||||| ||| |||||||||||| || |||| | || | |||||| ||    
T  27712475 tccttttggtctgtgtttgggttgttgtctgtttcttggcgaggtggtttggaggcgtggtctttgtctcttttgatgatttgtgtgtattttctctgtg 27712574  T
Q  121 gttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtg 196  Q
    |||| |||||  ||||  | ||| |||| ||||| |||||||| | |||||||||||| ||||| |||| ||||||    
T  27712575 gttgtttcttcggaatattatggtgatgtttgcttctttccttagagactttcaacctcgttgtattgctcttgtg 27712650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 22687191 - 22687082
Alignment:
Q  51 tgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgaggg-ttattctctatggttgcttctttagaatgctttggggatgc 149  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||  ||||||| ||| ||||||||  ||||||||||||  || | || ||| ||||     
T  22687191 tgtttcttggcgaggtggtttggcggcgtagtctttgtctcttttaatggtttgtgggtttattctcagtggttgcttcttcggacttctatggtgatgt 22687092  T
Q  150 ttgctgcttt 159  Q
    ||||||||||    
T  22687091 ttgctgcttt 22687082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 8730433 - 8730508
Alignment:
Q  119 tggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgt 195  Q
    ||||||| |||||| |||||| ||| |||| ||| ||||| |||||| |||||||||| |||||||||||| |||||    
T  8730433 tggttgcctctttataatgctatggcgatg-ttgttgcttaccttggagactttcaactttgttgtcttgctcttgt 8730508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 28966293 - 28966458
Alignment:
Q  51 tgtttcttggtgaggtggtttggaggcgttgtccttgtctcttttgttggtttgagggtt-attctctatggttgcttctttagaatgctttggggatgc 149  Q
    |||||||| | |||||||||||||||||| ||| |||||||||||| ||||||| | ||| ||||||  ||||||||||||| ||||| | ||| ||||     
T  28966293 tgtttcttagcgaggtggtttggaggcgtagtctttgtctcttttgatggtttgtgagtttattctccgtggttgcttctttggaatgttatggtgatgt 28966392  T
Q  150 ttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatccgtggtgtt 215  Q
    ||||| |||||||||| |||||||||||| |||||||||| |||||||||| ||| ||||||||||    
T  28966393 ttgctactttccttggagactttcaacctcgttgtcttgctcttgtgtctgctgaaccgtggtgtt 28966458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 8254456 - 8254523
Alignment:
Q  22 tcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtc 89  Q
    |||||| |||||||||| |||| | |||||||||||||| |||| |||||||||| || ||| |||||    
T  8254456 tccttttggtctgtgttcaggttgctgcctgtttcttggcgagggggtttggaggtgtagtctttgtc 8254523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 8267874 - 8267941
Alignment:
Q  22 tcctttgggtctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgttgtccttgtc 89  Q
    |||||| |||||||||| |||| | |||||||||||||| |||| |||||||||| || ||| |||||    
T  8267874 tccttttggtctgtgttcaggttgctgcctgtttcttggcgagggggtttggaggtgtagtctttgtc 8267941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 46699506 - 46699459
Alignment:
Q  31 tctgtgtttaggtcgatgcctgtttcttggtgaggtggtttggaggcgt 79  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||| |||||    
T  46699506 tctgtgttt-ggttgatgcctgtgtcttggtgaggtggtttggcggcgt 46699459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 27739352 - 27739409
Alignment:
Q  150 ttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgtgtctgttgatcc 207  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||||  |||||||||    
T  27739352 ttgctgctttccttggagactttaagccttgttgtcttgctcttgtgcttgttgatcc 27739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 25505474 - 25505399
Alignment:
Q  119 tggttgcttctttagaatgctttggggatgcttgctgctttccttggtgactttcaaccttgttgtcttgcgcttgt 195  Q
    ||||||| |||||| |||||| ||| |||| ||| ||||| |||||| |||||||||| |||||||||||| |||||    
T  25505474 tggttgcctctttataatgctatggcgatg-ttgttgcttaccttggagactttcaactttgttgtcttgctcttgt 25505399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University