View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5205_low_1 (Length: 685)
Name: NF5205_low_1
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5205_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 325 - 602
Target Start/End: Complemental strand, 1869268 - 1869001
Alignment:
| Q |
325 |
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg |
424 |
Q |
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| T |
1869268 |
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg |
1869169 |
T |
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| Q |
425 |
acacaatagcatgtgctagttacgtatgaaacaagtgtagttactactagttgtattctcatttacttaatgtgtagatctatttttgttactatgcaag |
524 |
Q |
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| T |
1869168 |
acacaatagcatgtgctagttacgtatgaaacaagtgtagttactactagttgtattct----------atgtgtagatctatttttattactatgcaag |
1869079 |
T |
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| Q |
525 |
aagtaacattttggagcatatgttatatgcaaaattttaagtattgggttcaagttaggtgacaagatgaagcacaaa |
602 |
Q |
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| T |
1869078 |
aagtaacattttggagcatatgttatatgcaaaattttaagtattgggttcaagttaggtgacaagatgaagcacaaa |
1869001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 1869582 - 1869349
Alignment:
| Q |
9 |
gacatcatcatcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatatgcggattgataacggctatttatataggaata |
108 |
Q |
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| T |
1869582 |
gacatcaccatcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatatgcggattgataacggct-tttatataggaata |
1869484 |
T |
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| Q |
109 |
tcggaaacactctctttcttaacactctctaacagtcactttcttatcgcatgaaatttagtgtggatactacaatttagaaatgtatttcatgtaaagt |
208 |
Q |
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| T |
1869483 |
tcggaaacactctctttcttaacactctctaatagtcactttcttatcgcatgaaatttagtgtggatactataatttagaaatgtatcccacgtaaagt |
1869384 |
T |
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| Q |
209 |
ggtgaaacccacataagtttcagtatgacggttag |
243 |
Q |
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| T |
1869383 |
gatgagacccacataagtttcaacatgacggttag |
1869349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 328 - 470
Target Start/End: Complemental strand, 1865198 - 1865056
Alignment:
| Q |
328 |
gagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcgaca |
427 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| || | | |
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| T |
1865198 |
gagattctaacttgctatggtatatataatgcagatgggtgatggctacaacatcacagtgaatgaattagtgaaaactctaagaaaggtgatctctaga |
1865099 |
T |
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| Q |
428 |
caatagcatgtgctagttacgtatgaaacaagtgtagttacta |
470 |
Q |
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| T |
1865098 |
caatagcatgtgctagttacgtatgaaacaagtgtagttacta |
1865056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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